Results 1 - 20 of 24 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18453 | 5' | -52.7 | NC_004681.1 | + | 74198 | 0.71 | 0.651602 |
Target: 5'- cAGCcucaUGCGUCGGGCGGAUg-GACUGAu -3' miRNA: 3'- -UCGa---GCGUAGCCUGCUUAagCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 64887 | 0.69 | 0.777615 |
Target: 5'- cAGCUCGUg--GGGCGAGa-CGACCGGa -3' miRNA: 3'- -UCGAGCGuagCCUGCUUaaGCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 58706 | 0.68 | 0.842594 |
Target: 5'- -cCUCGUugAUCcgauGGGCGAAUUCGACCc- -3' miRNA: 3'- ucGAGCG--UAG----CCUGCUUAAGCUGGcu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 48813 | 0.69 | 0.777615 |
Target: 5'- cAGCUCGUugaccgCGGGCGAc-UCGaaGCCGAa -3' miRNA: 3'- -UCGAGCGua----GCCUGCUuaAGC--UGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 48688 | 0.69 | 0.777615 |
Target: 5'- cAGCUCcCAUgGGcCGAGUUCGGCuuCGAg -3' miRNA: 3'- -UCGAGcGUAgCCuGCUUAAGCUG--GCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 47933 | 0.7 | 0.716069 |
Target: 5'- -cCUCGCAUgGGGCGAAgacagUCGccauCCGAu -3' miRNA: 3'- ucGAGCGUAgCCUGCUUa----AGCu---GGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 40581 | 0.68 | 0.842594 |
Target: 5'- uGCUa-CAUCGuGGCGGcgUCGGCCGc -3' miRNA: 3'- uCGAgcGUAGC-CUGCUuaAGCUGGCu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 40151 | 0.66 | 0.897096 |
Target: 5'- uGCUgGCGUCGGccuGCGGGaUCGGCUu- -3' miRNA: 3'- uCGAgCGUAGCC---UGCUUaAGCUGGcu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 39694 | 0.7 | 0.726593 |
Target: 5'- cGCUCaaauucaGUCGGuCGAAUUCGuCCGAu -3' miRNA: 3'- uCGAGcg-----UAGCCuGCUUAAGCuGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 39580 | 1.09 | 0.002936 |
Target: 5'- gAGCUCGCAUCGGACGAAUUCGACCGAc -3' miRNA: 3'- -UCGAGCGUAGCCUGCUUAAGCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 39172 | 0.66 | 0.928363 |
Target: 5'- gGGCUUGCAcggcgcggUCGGACaGGUgcUUGACCa- -3' miRNA: 3'- -UCGAGCGU--------AGCCUGcUUA--AGCUGGcu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 38318 | 0.67 | 0.890049 |
Target: 5'- cGC-CGCcgCgGGACGucUUCGGCCGc -3' miRNA: 3'- uCGaGCGuaG-CCUGCuuAAGCUGGCu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 35894 | 0.69 | 0.787422 |
Target: 5'- uGGCcgCGCcccgcaauggaGUCGGACGAAUacuacggugUCGGCUGGa -3' miRNA: 3'- -UCGa-GCG-----------UAGCCUGCUUA---------AGCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 32857 | 0.66 | 0.910404 |
Target: 5'- cGUUCGCcUUGGugGggUacUCGcagggcGCCGAg -3' miRNA: 3'- uCGAGCGuAGCCugCuuA--AGC------UGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 32003 | 0.71 | 0.66245 |
Target: 5'- cGGCUCGCugAUCGGcgccGCGggUgucggcaCGGCCGGu -3' miRNA: 3'- -UCGAGCG--UAGCC----UGCuuAa------GCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 21317 | 0.68 | 0.842594 |
Target: 5'- aGGCgaccaUCGUcgUGGACGuggUCGACCGc -3' miRNA: 3'- -UCG-----AGCGuaGCCUGCuuaAGCUGGCu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 19342 | 0.66 | 0.922646 |
Target: 5'- gAGgaCGagaCcGACGAGUUCGACCGGg -3' miRNA: 3'- -UCgaGCguaGcCUGCUUAAGCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 13062 | 0.68 | 0.815855 |
Target: 5'- aAGCUCGCAUCGc-CGAGcUCGaaGCCGc -3' miRNA: 3'- -UCGAGCGUAGCcuGCUUaAGC--UGGCu -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 13000 | 0.69 | 0.787422 |
Target: 5'- cGCUgGCAccgCGGACGAcGUggccgCGACUGAc -3' miRNA: 3'- uCGAgCGUa--GCCUGCU-UAa----GCUGGCU- -5' |
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18453 | 5' | -52.7 | NC_004681.1 | + | 12195 | 0.68 | 0.851088 |
Target: 5'- cAGCgagaCGCG-CGGGCGGAccUCGGCCa- -3' miRNA: 3'- -UCGa---GCGUaGCCUGCUUa-AGCUGGcu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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