Results 21 - 28 of 28 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 18454 | 3' | -59.6 | NC_004681.1 | + | 27691 | 0.66 | 0.473921 |
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Target: 5'- gUGAcCCAgGCGCCuGUgguGCCUGCCGg -3' miRNA: 3'- aACUuGGU-CGCGG-CGaacCGGACGGU- -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 25287 | 0.77 | 0.09176 |
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Target: 5'- ---uGCCAGCGCCGCcaggGGCCUGaCCGg -3' miRNA: 3'- aacuUGGUCGCGGCGaa--CCGGAC-GGU- -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 22192 | 0.67 | 0.454398 |
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Target: 5'- gUGAugCGGCGCUGCaacUUGGCCacaggggauuccUGCg- -3' miRNA: 3'- aACUugGUCGCGGCG---AACCGG------------ACGgu -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 20019 | 0.66 | 0.48384 |
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Target: 5'- gUUGAGCaGGC-CCGCggUGGCCuucaUGCCGu -3' miRNA: 3'- -AACUUGgUCGcGGCGa-ACCGG----ACGGU- -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 18482 | 0.74 | 0.150243 |
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Target: 5'- ---cGCCgcGGcCGCCGCcUGGCCUGCCAu -3' miRNA: 3'- aacuUGG--UC-GCGGCGaACCGGACGGU- -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 16236 | 0.66 | 0.469982 |
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Target: 5'- aUGGccGCCAGCGCCGCgaaGCCgauacccgacacaGCCGu -3' miRNA: 3'- aACU--UGGUCGCGGCGaacCGGa------------CGGU- -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 9100 | 0.69 | 0.315943 |
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Target: 5'- ---cACCGGCGCCGCUggcucgGGCuCUGgCGu -3' miRNA: 3'- aacuUGGUCGCGGCGAa-----CCG-GACgGU- -5' |
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| 18454 | 3' | -59.6 | NC_004681.1 | + | 6280 | 0.76 | 0.11766 |
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Target: 5'- -cGAACgAGgGCCGCgagaucaugGGCCUGCCGc -3' miRNA: 3'- aaCUUGgUCgCGGCGaa-------CCGGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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