Results 21 - 28 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18454 | 3' | -59.6 | NC_004681.1 | + | 9100 | 0.69 | 0.315943 |
Target: 5'- ---cACCGGCGCCGCUggcucgGGCuCUGgCGu -3' miRNA: 3'- aacuUGGUCGCGGCGAa-----CCG-GACgGU- -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 31241 | 0.68 | 0.40759 |
Target: 5'- -gGGACCGGCGCCGaguguUUGGCUacgGCa- -3' miRNA: 3'- aaCUUGGUCGCGGCg----AACCGGa--CGgu -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 70061 | 0.68 | 0.40759 |
Target: 5'- -cGucuCCAGCGUCuCUcUGGCUUGCCAg -3' miRNA: 3'- aaCuu-GGUCGCGGcGA-ACCGGACGGU- -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 36773 | 0.67 | 0.464106 |
Target: 5'- -cGucuGCCAG-GCCGC-UGGCCcGCCc -3' miRNA: 3'- aaCu--UGGUCgCGGCGaACCGGaCGGu -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 38878 | 0.66 | 0.493856 |
Target: 5'- -aGAGCUGGCGCCaCUggagaaGGCCaGCCu -3' miRNA: 3'- aaCUUGGUCGCGGcGAa-----CCGGaCGGu -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 58657 | 0.66 | 0.524449 |
Target: 5'- -cGGccGCCuGCGCCGCg-GGCCacaccUGCCu -3' miRNA: 3'- aaCU--UGGuCGCGGCGaaCCGG-----ACGGu -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 59666 | 0.66 | 0.528584 |
Target: 5'- gUGGGCuuccagccaacauggCAGCGCCGCcacgcccccugcUgggagugcGGCCUGCCAa -3' miRNA: 3'- aACUUG---------------GUCGCGGCG------------Aa-------CCGGACGGU- -5' |
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18454 | 3' | -59.6 | NC_004681.1 | + | 40000 | 1.06 | 0.000692 |
Target: 5'- cUUGAACCAGCGCCGCUUGGCCUGCCAg -3' miRNA: 3'- -AACUUGGUCGCGGCGAACCGGACGGU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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