miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18454 5' -59 NC_004681.1 + 25038 0.66 0.62391
Target:  5'- uGAUG-CGGGGCcgucGAAGUCGAcgCCgCGCAg -3'
miRNA:   3'- -CUGCaGUCCCG----CUUCGGCUa-GG-GCGU- -5'
18454 5' -59 NC_004681.1 + 50455 0.66 0.611298
Target:  5'- cACGUCGuGGGCGAcGCCcaccccgaccguGUCCUGCGc -3'
miRNA:   3'- cUGCAGU-CCCGCUuCGGc-----------UAGGGCGU- -5'
18454 5' -59 NC_004681.1 + 17901 0.66 0.602902
Target:  5'- gGGCGgCGGcGGCGAGGguCCGGUacucaagcggucCCCGCAg -3'
miRNA:   3'- -CUGCaGUC-CCGCUUC--GGCUA------------GGGCGU- -5'
18454 5' -59 NC_004681.1 + 14644 0.66 0.592429
Target:  5'- uGGCGgUGGcGGCGAuGCCGAcCCCGUu -3'
miRNA:   3'- -CUGCaGUC-CCGCUuCGGCUaGGGCGu -5'
18454 5' -59 NC_004681.1 + 10515 0.66 0.581986
Target:  5'- cGGCaa-GGGcGCGAAGuCCGAccgcggaaUCCCGCAg -3'
miRNA:   3'- -CUGcagUCC-CGCUUC-GGCU--------AGGGCGU- -5'
18454 5' -59 NC_004681.1 + 1038 0.66 0.57158
Target:  5'- --gGUCAGGGUGAGGUCGGcgUCuuGgAg -3'
miRNA:   3'- cugCAGUCCCGCUUCGGCU--AGggCgU- -5'
18454 5' -59 NC_004681.1 + 13822 0.67 0.561221
Target:  5'- cGAUGUUcuugAGGGCGAGGUCGAccucaaUCUCgGCGg -3'
miRNA:   3'- -CUGCAG----UCCCGCUUCGGCU------AGGG-CGU- -5'
18454 5' -59 NC_004681.1 + 4753 0.67 0.561221
Target:  5'- gGACaUguGGGCGAAGUCGuUCuuGUAg -3'
miRNA:   3'- -CUGcAguCCCGCUUCGGCuAGggCGU- -5'
18454 5' -59 NC_004681.1 + 38208 0.67 0.550913
Target:  5'- uGugGaUGGGGCG--GCCGAagacgUCCCGCGg -3'
miRNA:   3'- -CugCaGUCCCGCuuCGGCU-----AGGGCGU- -5'
18454 5' -59 NC_004681.1 + 28211 0.67 0.550913
Target:  5'- -cCG-CGGGGcCGucGCUGGUCCCGUu -3'
miRNA:   3'- cuGCaGUCCC-GCuuCGGCUAGGGCGu -5'
18454 5' -59 NC_004681.1 + 990 0.67 0.530479
Target:  5'- gGACGcCAGGGCG--GCU--UCCCGCu -3'
miRNA:   3'- -CUGCaGUCCCGCuuCGGcuAGGGCGu -5'
18454 5' -59 NC_004681.1 + 16245 0.67 0.524403
Target:  5'- aGCGaCGGGauggccgccagcgccGCGAAGCCGAUaCCCGaCAc -3'
miRNA:   3'- cUGCaGUCC---------------CGCUUCGGCUA-GGGC-GU- -5'
18454 5' -59 NC_004681.1 + 1602 0.67 0.520366
Target:  5'- aGCGUCuccuuGGGUGAuucccGCCcAUCCUGCAa -3'
miRNA:   3'- cUGCAGu----CCCGCUu----CGGcUAGGGCGU- -5'
18454 5' -59 NC_004681.1 + 3741 0.67 0.510329
Target:  5'- cGACGUCGaaGGCGAGGgCGG-CCUGCu -3'
miRNA:   3'- -CUGCAGUc-CCGCUUCgGCUaGGGCGu -5'
18454 5' -59 NC_004681.1 + 47880 0.67 0.509329
Target:  5'- gGACGUgacuUGGGGUGAcauccgcGGCCGAUCauuacgaaCCGCAa -3'
miRNA:   3'- -CUGCA----GUCCCGCU-------UCGGCUAG--------GGCGU- -5'
18454 5' -59 NC_004681.1 + 8888 0.67 0.508331
Target:  5'- --gGUCAGGGCGuuggcgaccuuGCCGA-CCUGCu -3'
miRNA:   3'- cugCAGUCCCGCuu---------CGGCUaGGGCGu -5'
18454 5' -59 NC_004681.1 + 39283 0.68 0.474907
Target:  5'- cGACGUCgAGGGCGAgcaucuccgcggcccGgauGCCGGUCUCGg- -3'
miRNA:   3'- -CUGCAG-UCCCGCU---------------U---CGGCUAGGGCgu -5'
18454 5' -59 NC_004681.1 + 18737 0.69 0.406271
Target:  5'- gGGCGaCGGcGGCGAGGCCGcgCgugacaCCGCAc -3'
miRNA:   3'- -CUGCaGUC-CCGCUUCGGCuaG------GGCGU- -5'
18454 5' -59 NC_004681.1 + 13691 0.7 0.363571
Target:  5'- gGACGUCAuuGGCGuGGCCG--CCCGCGg -3'
miRNA:   3'- -CUGCAGUc-CCGCuUCGGCuaGGGCGU- -5'
18454 5' -59 NC_004681.1 + 56761 0.71 0.316579
Target:  5'- cGACGUgccgCGGGGCGAGGCCca-CCUGUAc -3'
miRNA:   3'- -CUGCA----GUCCCGCUUCGGcuaGGGCGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.