Results 1 - 20 of 23 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18454 | 5' | -59 | NC_004681.1 | + | 990 | 0.67 | 0.530479 |
Target: 5'- gGACGcCAGGGCG--GCU--UCCCGCu -3' miRNA: 3'- -CUGCaGUCCCGCuuCGGcuAGGGCGu -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 1038 | 0.66 | 0.57158 |
Target: 5'- --gGUCAGGGUGAGGUCGGcgUCuuGgAg -3' miRNA: 3'- cugCAGUCCCGCUUCGGCU--AGggCgU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 1602 | 0.67 | 0.520366 |
Target: 5'- aGCGUCuccuuGGGUGAuucccGCCcAUCCUGCAa -3' miRNA: 3'- cUGCAGu----CCCGCUu----CGGcUAGGGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 3741 | 0.67 | 0.510329 |
Target: 5'- cGACGUCGaaGGCGAGGgCGG-CCUGCu -3' miRNA: 3'- -CUGCAGUc-CCGCUUCgGCUaGGGCGu -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 4753 | 0.67 | 0.561221 |
Target: 5'- gGACaUguGGGCGAAGUCGuUCuuGUAg -3' miRNA: 3'- -CUGcAguCCCGCUUCGGCuAGggCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 8888 | 0.67 | 0.508331 |
Target: 5'- --gGUCAGGGCGuuggcgaccuuGCCGA-CCUGCu -3' miRNA: 3'- cugCAGUCCCGCuu---------CGGCUaGGGCGu -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 10515 | 0.66 | 0.581986 |
Target: 5'- cGGCaa-GGGcGCGAAGuCCGAccgcggaaUCCCGCAg -3' miRNA: 3'- -CUGcagUCC-CGCUUC-GGCU--------AGGGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 13691 | 0.7 | 0.363571 |
Target: 5'- gGACGUCAuuGGCGuGGCCG--CCCGCGg -3' miRNA: 3'- -CUGCAGUc-CCGCuUCGGCuaGGGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 13822 | 0.67 | 0.561221 |
Target: 5'- cGAUGUUcuugAGGGCGAGGUCGAccucaaUCUCgGCGg -3' miRNA: 3'- -CUGCAG----UCCCGCUUCGGCU------AGGG-CGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 14644 | 0.66 | 0.592429 |
Target: 5'- uGGCGgUGGcGGCGAuGCCGAcCCCGUu -3' miRNA: 3'- -CUGCaGUC-CCGCUuCGGCUaGGGCGu -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 16245 | 0.67 | 0.524403 |
Target: 5'- aGCGaCGGGauggccgccagcgccGCGAAGCCGAUaCCCGaCAc -3' miRNA: 3'- cUGCaGUCC---------------CGCUUCGGCUA-GGGC-GU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 17901 | 0.66 | 0.602902 |
Target: 5'- gGGCGgCGGcGGCGAGGguCCGGUacucaagcggucCCCGCAg -3' miRNA: 3'- -CUGCaGUC-CCGCUUC--GGCUA------------GGGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 18737 | 0.69 | 0.406271 |
Target: 5'- gGGCGaCGGcGGCGAGGCCGcgCgugacaCCGCAc -3' miRNA: 3'- -CUGCaGUC-CCGCUUCGGCuaG------GGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 25038 | 0.66 | 0.62391 |
Target: 5'- uGAUG-CGGGGCcgucGAAGUCGAcgCCgCGCAg -3' miRNA: 3'- -CUGCaGUCCCG----CUUCGGCUa-GG-GCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 28211 | 0.67 | 0.550913 |
Target: 5'- -cCG-CGGGGcCGucGCUGGUCCCGUu -3' miRNA: 3'- cuGCaGUCCC-GCuuCGGCUAGGGCGu -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 38208 | 0.67 | 0.550913 |
Target: 5'- uGugGaUGGGGCG--GCCGAagacgUCCCGCGg -3' miRNA: 3'- -CugCaGUCCCGCuuCGGCU-----AGGGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 39283 | 0.68 | 0.474907 |
Target: 5'- cGACGUCgAGGGCGAgcaucuccgcggcccGgauGCCGGUCUCGg- -3' miRNA: 3'- -CUGCAG-UCCCGCU---------------U---CGGCUAGGGCgu -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 40036 | 1.08 | 0.000747 |
Target: 5'- aGACGUCAGGGCGAAGCCGAUCCCGCAg -3' miRNA: 3'- -CUGCAGUCCCGCUUCGGCUAGGGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 47880 | 0.67 | 0.509329 |
Target: 5'- gGACGUgacuUGGGGUGAcauccgcGGCCGAUCauuacgaaCCGCAa -3' miRNA: 3'- -CUGCA----GUCCCGCU-------UCGGCUAG--------GGCGU- -5' |
|||||||
18454 | 5' | -59 | NC_004681.1 | + | 50455 | 0.66 | 0.611298 |
Target: 5'- cACGUCGuGGGCGAcGCCcaccccgaccguGUCCUGCGc -3' miRNA: 3'- cUGCAGU-CCCGCUuCGGc-----------UAGGGCGU- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home