miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 3224 0.66 0.399211
Target:  5'- --cACCaaCCGGGACcuGGCcgAGGCUGCg -3'
miRNA:   3'- cacUGGcgGGCCCUGu-CCG--UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 57312 0.66 0.399211
Target:  5'- aGUGACUuCCUGGGGC-GGCGauCCGCc -3'
miRNA:   3'- -CACUGGcGGGCCCUGuCCGUccGGCG- -5'
18455 5' -63.9 NC_004681.1 + 29946 0.66 0.394147
Target:  5'- uUGACCGCauucgcgccaacaGGGGCAaGCGcGCCGCg -3'
miRNA:   3'- cACUGGCGgg-----------CCCUGUcCGUcCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 25430 0.66 0.390794
Target:  5'- --cACCGUCuCGGGAgGGGUcGGUgGCg -3'
miRNA:   3'- cacUGGCGG-GCCCUgUCCGuCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 9626 0.66 0.389958
Target:  5'- -aGGCCGa--GGGGCGGuacaccaGCAGGCCGa -3'
miRNA:   3'- caCUGGCgggCCCUGUC-------CGUCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 633 0.66 0.382493
Target:  5'- uGUGcCCGUCguugaGGGACucGC-GGCCGCg -3'
miRNA:   3'- -CACuGGCGGg----CCCUGucCGuCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 50995 0.66 0.382493
Target:  5'- cGUGuCCGaCUCGaGuAUuGGCAGGCCGCc -3'
miRNA:   3'- -CACuGGC-GGGC-CcUGuCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 13137 0.66 0.381669
Target:  5'- --cACCGCCCuucguggcacggcGGGuACGGGCGGGUuuuaucaacucuCGCa -3'
miRNA:   3'- cacUGGCGGG-------------CCC-UGUCCGUCCG------------GCG- -5'
18455 5' -63.9 NC_004681.1 + 33126 0.66 0.380025
Target:  5'- uUGACgGgggcgaugccauguCCCGaGGuC-GGCAGGCCGCu -3'
miRNA:   3'- cACUGgC--------------GGGC-CCuGuCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 39240 0.66 0.366246
Target:  5'- -cGugCGCCgCGGcaaGGGCgccaaGGGCCGCc -3'
miRNA:   3'- caCugGCGG-GCCcugUCCG-----UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 24760 0.66 0.366246
Target:  5'- -cGAUCaGCUCGGG-CGGGUugucgGGGuCCGCg -3'
miRNA:   3'- caCUGG-CGGGCCCuGUCCG-----UCC-GGCG- -5'
18455 5' -63.9 NC_004681.1 + 14442 0.66 0.366246
Target:  5'- --cGCCGCCCGcGaGGCggAGGCGaacGCCGCg -3'
miRNA:   3'- cacUGGCGGGC-C-CUG--UCCGUc--CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 49454 0.66 0.358304
Target:  5'- gGUGugCGCCCaGuGGuCAGcgcccGCGGcGCCGCc -3'
miRNA:   3'- -CACugGCGGG-C-CCuGUC-----CGUC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 51743 0.66 0.358304
Target:  5'- -cGGCCGcCCCGGcGCGGGCAagaguaacGCCGg -3'
miRNA:   3'- caCUGGC-GGGCCcUGUCCGUc-------CGGCg -5'
18455 5' -63.9 NC_004681.1 + 57588 0.66 0.358304
Target:  5'- gGUGGCCaGCCUGGGAaccGUccGCCGCc -3'
miRNA:   3'- -CACUGG-CGGGCCCUgucCGucCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 68572 0.66 0.350482
Target:  5'- cUGGCaCGCCUGGagcGACA-GCGGGCCa- -3'
miRNA:   3'- cACUG-GCGGGCC---CUGUcCGUCCGGcg -5'
18455 5' -63.9 NC_004681.1 + 59289 0.66 0.350482
Target:  5'- --aGCCGCCCGGGA--GGCcguccgugacauAGGUgGCg -3'
miRNA:   3'- cacUGGCGGGCCCUguCCG------------UCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 18271 0.66 0.350482
Target:  5'- -gGACCGCCaGGGAgA-GUAGGaCCGUu -3'
miRNA:   3'- caCUGGCGGgCCCUgUcCGUCC-GGCG- -5'
18455 5' -63.9 NC_004681.1 + 16871 0.66 0.350482
Target:  5'- --uGCCGCCaGGcaccgacgugucGACAGGCAGGaCCGg -3'
miRNA:   3'- cacUGGCGGgCC------------CUGUCCGUCC-GGCg -5'
18455 5' -63.9 NC_004681.1 + 48654 0.67 0.342783
Target:  5'- --cACCGCCuccacgcuggCGGGAacccuGGCGGGCCaGCu -3'
miRNA:   3'- cacUGGCGG----------GCCCUgu---CCGUCCGG-CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.