miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 18067 0.67 0.320422
Target:  5'- aGUGGCCGCauGGGcuGCGGGgcccacCGGaGCCGCc -3'
miRNA:   3'- -CACUGGCGggCCC--UGUCC------GUC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 53342 0.67 0.313216
Target:  5'- uUGGCCGCCUGGuGCAGGU--GCCa- -3'
miRNA:   3'- cACUGGCGGGCCcUGUCCGucCGGcg -5'
18455 5' -63.9 NC_004681.1 + 65910 0.67 0.313216
Target:  5'- -cGACCGacuuguaCgGGGugGGGC-GGCCGa -3'
miRNA:   3'- caCUGGCg------GgCCCugUCCGuCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 30940 0.67 0.311078
Target:  5'- cGUG-CCGUccuccacgauggguCCGGG-CAGGUAGGCC-Ca -3'
miRNA:   3'- -CACuGGCG--------------GGCCCuGUCCGUCCGGcG- -5'
18455 5' -63.9 NC_004681.1 + 38318 0.67 0.335206
Target:  5'- --cGCCGCCgCGGGACGucuucGGCCGCc -3'
miRNA:   3'- cacUGGCGG-GCCCUGUccgu-CCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 59796 0.67 0.335206
Target:  5'- -aGGCCGCaCUcccagcagGGGGCGuGGCGGcGCUGCc -3'
miRNA:   3'- caCUGGCG-GG--------CCCUGU-CCGUC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 46558 0.67 0.342783
Target:  5'- -aGACCuccaGgCCGaGGuacCGGaGCAGGCCGCg -3'
miRNA:   3'- caCUGG----CgGGC-CCu--GUC-CGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 28483 0.67 0.327014
Target:  5'- ---cCCGCCCGGGGCuGGGCucacacucaccccGGGCaccccCGCg -3'
miRNA:   3'- cacuGGCGGGCCCUG-UCCG-------------UCCG-----GCG- -5'
18455 5' -63.9 NC_004681.1 + 31155 0.67 0.313216
Target:  5'- -gGACaucgaGuCCUGGGGCGGGCAGauucGCgGCa -3'
miRNA:   3'- caCUGg----C-GGGCCCUGUCCGUC----CGgCG- -5'
18455 5' -63.9 NC_004681.1 + 61081 0.67 0.306133
Target:  5'- cUGACCGCCgaccccgagcugCGGuucacccaaGGUGGGCAGGCCGUc -3'
miRNA:   3'- cACUGGCGG------------GCC---------CUGUCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 12566 0.67 0.317525
Target:  5'- aGUGACCguGCCCGGGucaaacaccuuccCGGGCAcGGCUc- -3'
miRNA:   3'- -CACUGG--CGGGCCCu------------GUCCGU-CCGGcg -5'
18455 5' -63.9 NC_004681.1 + 39143 0.67 0.34202
Target:  5'- uUGACCaccuucugguccaGCuuGGGugGGcgcaccaccaGCAGGCCGUc -3'
miRNA:   3'- cACUGG-------------CGggCCCugUC----------CGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 39328 0.67 0.327753
Target:  5'- --cGCCGCgCuGGACAcGGCuccgagGGGCCGCu -3'
miRNA:   3'- cacUGGCGgGcCCUGU-CCG------UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 48654 0.67 0.342783
Target:  5'- --cACCGCCuccacgcuggCGGGAacccuGGCGGGCCaGCu -3'
miRNA:   3'- cacUGGCGG----------GCCCUgu---CCGUCCGG-CG- -5'
18455 5' -63.9 NC_004681.1 + 49541 0.67 0.327753
Target:  5'- -cGACauCGCCCuGGccuucccccGCGGGCAGGCCcgagGCa -3'
miRNA:   3'- caCUG--GCGGGcCC---------UGUCCGUCCGG----CG- -5'
18455 5' -63.9 NC_004681.1 + 20026 0.68 0.27256
Target:  5'- -cGaACCGCggagaCCaGGACGGGU-GGCCGCg -3'
miRNA:   3'- caC-UGGCG-----GGcCCUGUCCGuCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 42015 0.68 0.297109
Target:  5'- --cGCUGCUCGGGACAGGU-GGCguuauucaguuuggCGCg -3'
miRNA:   3'- cacUGGCGGGCCCUGUCCGuCCG--------------GCG- -5'
18455 5' -63.9 NC_004681.1 + 3130 0.68 0.27903
Target:  5'- uUGG-CGCCgCGGGuGCGGGCAuuGCCGCu -3'
miRNA:   3'- cACUgGCGG-GCCC-UGUCCGUc-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 1067 0.68 0.27256
Target:  5'- aUGAauGCCCGGGGCucGUAGcGCCGg -3'
miRNA:   3'- cACUggCGGGCCCUGucCGUC-CGGCg -5'
18455 5' -63.9 NC_004681.1 + 30137 0.68 0.27903
Target:  5'- -aGGCgGCCUGuGGGuCGGGCucAGGCgGCg -3'
miRNA:   3'- caCUGgCGGGC-CCU-GUCCG--UCCGgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.