miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 40132 1.1 0.000185
Target:  5'- gGUGACCGCCCGGGACAGGCAGGCCGCg -3'
miRNA:   3'- -CACUGGCGGGCCCUGUCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 52972 0.75 0.097208
Target:  5'- --cGCgGCUCGGGcacGCGGGCAGGCCGa -3'
miRNA:   3'- cacUGgCGGGCCC---UGUCCGUCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 25052 0.74 0.102449
Target:  5'- gGUGACCGCagaGGGCGGcGCGGGCgGCa -3'
miRNA:   3'- -CACUGGCGggcCCUGUC-CGUCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 32518 0.72 0.15891
Target:  5'- cUGAUCGCgCUGGGugAGuuccuGguGGCCGCu -3'
miRNA:   3'- cACUGGCG-GGCCCugUC-----CguCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 58915 0.72 0.154926
Target:  5'- uUGGCCucuGUCCGGGugAGGCccagcaacuccuGGGCgCGCg -3'
miRNA:   3'- cACUGG---CGGGCCCugUCCG------------UCCG-GCG- -5'
18455 5' -63.9 NC_004681.1 + 67889 0.71 0.180247
Target:  5'- -cGAacaCGCCCGGGugGaGGCuacGGCCGa -3'
miRNA:   3'- caCUg--GCGGGCCCugU-CCGu--CCGGCg -5'
18455 5' -63.9 NC_004681.1 + 41672 0.71 0.175786
Target:  5'- cGUGcGCUGCCUGcGGGguGGCGcugcauggcGGCCGCg -3'
miRNA:   3'- -CAC-UGGCGGGC-CCUguCCGU---------CCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 29267 0.7 0.204085
Target:  5'- aUGGCCGCCCaGGGGuuGGUcguugacguGGCCGUu -3'
miRNA:   3'- cACUGGCGGG-CCCUguCCGu--------CCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 3609 0.7 0.204085
Target:  5'- gGUGAaaucuacggcgUCGCCCGcGACAagaaGCAGGCCGCc -3'
miRNA:   3'- -CACU-----------GGCGGGCcCUGUc---CGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 58755 0.69 0.225081
Target:  5'- uGUGGCC-CgCGGcGCAGGC-GGCCGUg -3'
miRNA:   3'- -CACUGGcGgGCCcUGUCCGuCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 21359 0.69 0.247882
Target:  5'- -gGGUCGCCaGGGAgccaCAGGCuGGCCGUg -3'
miRNA:   3'- caCUGGCGGgCCCU----GUCCGuCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 18392 0.69 0.230609
Target:  5'- cUGACCGCCaguCGaGGACugcGGCcGuGCCGCg -3'
miRNA:   3'- cACUGGCGG---GC-CCUGu--CCGuC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 849 0.69 0.242008
Target:  5'- -gGGCgGCa-GGGcCGGGUAGGCCGUc -3'
miRNA:   3'- caCUGgCGggCCCuGUCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 36891 0.69 0.253873
Target:  5'- -gGACUGCCUagucagcggGGGGCGGGCcagcGGCCugGCa -3'
miRNA:   3'- caCUGGCGGG---------CCCUGUCCGu---CCGG--CG- -5'
18455 5' -63.9 NC_004681.1 + 3130 0.68 0.27903
Target:  5'- uUGG-CGCCgCGGGuGCGGGCAuuGCCGCu -3'
miRNA:   3'- cACUgGCGG-GCCC-UGUCCGUc-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 1067 0.68 0.27256
Target:  5'- aUGAauGCCCGGGGCucGUAGcGCCGg -3'
miRNA:   3'- cACUggCGGGCCCUGucCGUC-CGGCg -5'
18455 5' -63.9 NC_004681.1 + 17939 0.68 0.27256
Target:  5'- -gGGgCGCCCGGGuu-GGUgAGGCCGg -3'
miRNA:   3'- caCUgGCGGGCCCuguCCG-UCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 42015 0.68 0.297109
Target:  5'- --cGCUGCUCGGGACAGGU-GGCguuauucaguuuggCGCg -3'
miRNA:   3'- cacUGGCGGGCCCUGUCCGuCCG--------------GCG- -5'
18455 5' -63.9 NC_004681.1 + 30137 0.68 0.27903
Target:  5'- -aGGCgGCCUGuGGGuCGGGCucAGGCgGCg -3'
miRNA:   3'- caCUGgCGGGC-CCU-GUCCG--UCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 20026 0.68 0.27256
Target:  5'- -cGaACCGCggagaCCaGGACGGGU-GGCCGCg -3'
miRNA:   3'- caC-UGGCG-----GGcCCUGUCCGuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.