Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18455 | 5' | -63.9 | NC_004681.1 | + | 49454 | 0.66 | 0.358304 |
Target: 5'- gGUGugCGCCCaGuGGuCAGcgcccGCGGcGCCGCc -3' miRNA: 3'- -CACugGCGGG-C-CCuGUC-----CGUC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 51743 | 0.66 | 0.358304 |
Target: 5'- -cGGCCGcCCCGGcGCGGGCAagaguaacGCCGg -3' miRNA: 3'- caCUGGC-GGGCCcUGUCCGUc-------CGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57588 | 0.66 | 0.358304 |
Target: 5'- gGUGGCCaGCCUGGGAaccGUccGCCGCc -3' miRNA: 3'- -CACUGG-CGGGCCCUgucCGucCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 24760 | 0.66 | 0.366246 |
Target: 5'- -cGAUCaGCUCGGG-CGGGUugucgGGGuCCGCg -3' miRNA: 3'- caCUGG-CGGGCCCuGUCCG-----UCC-GGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 14442 | 0.66 | 0.366246 |
Target: 5'- --cGCCGCCCGcGaGGCggAGGCGaacGCCGCg -3' miRNA: 3'- cacUGGCGGGC-C-CUG--UCCGUc--CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 39240 | 0.66 | 0.366246 |
Target: 5'- -cGugCGCCgCGGcaaGGGCgccaaGGGCCGCc -3' miRNA: 3'- caCugGCGG-GCCcugUCCG-----UCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 33126 | 0.66 | 0.380025 |
Target: 5'- uUGACgGgggcgaugccauguCCCGaGGuC-GGCAGGCCGCu -3' miRNA: 3'- cACUGgC--------------GGGC-CCuGuCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 13137 | 0.66 | 0.381669 |
Target: 5'- --cACCGCCCuucguggcacggcGGGuACGGGCGGGUuuuaucaacucuCGCa -3' miRNA: 3'- cacUGGCGGG-------------CCC-UGUCCGUCCG------------GCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 633 | 0.66 | 0.382493 |
Target: 5'- uGUGcCCGUCguugaGGGACucGC-GGCCGCg -3' miRNA: 3'- -CACuGGCGGg----CCCUGucCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 50995 | 0.66 | 0.382493 |
Target: 5'- cGUGuCCGaCUCGaGuAUuGGCAGGCCGCc -3' miRNA: 3'- -CACuGGC-GGGC-CcUGuCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 9626 | 0.66 | 0.389958 |
Target: 5'- -aGGCCGa--GGGGCGGuacaccaGCAGGCCGa -3' miRNA: 3'- caCUGGCgggCCCUGUC-------CGUCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 25430 | 0.66 | 0.390794 |
Target: 5'- --cACCGUCuCGGGAgGGGUcGGUgGCg -3' miRNA: 3'- cacUGGCGG-GCCCUgUCCGuCCGgCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 29946 | 0.66 | 0.394147 |
Target: 5'- uUGACCGCauucgcgccaacaGGGGCAaGCGcGCCGCg -3' miRNA: 3'- cACUGGCGgg-----------CCCUGUcCGUcCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 3224 | 0.66 | 0.399211 |
Target: 5'- --cACCaaCCGGGACcuGGCcgAGGCUGCg -3' miRNA: 3'- cacUGGcgGGCCCUGu-CCG--UCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57312 | 0.66 | 0.399211 |
Target: 5'- aGUGACUuCCUGGGGC-GGCGauCCGCc -3' miRNA: 3'- -CACUGGcGGGCCCUGuCCGUccGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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