Results 41 - 55 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18455 | 5' | -63.9 | NC_004681.1 | + | 20026 | 0.68 | 0.27256 |
Target: 5'- -cGaACCGCggagaCCaGGACGGGU-GGCCGCg -3' miRNA: 3'- caC-UGGCG-----GGcCCUGUCCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 36891 | 0.69 | 0.253873 |
Target: 5'- -gGACUGCCUagucagcggGGGGCGGGCcagcGGCCugGCa -3' miRNA: 3'- caCUGGCGGG---------CCCUGUCCGu---CCGG--CG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 21359 | 0.69 | 0.247882 |
Target: 5'- -gGGUCGCCaGGGAgccaCAGGCuGGCCGUg -3' miRNA: 3'- caCUGGCGGgCCCU----GUCCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 849 | 0.69 | 0.242008 |
Target: 5'- -gGGCgGCa-GGGcCGGGUAGGCCGUc -3' miRNA: 3'- caCUGgCGggCCCuGUCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 18392 | 0.69 | 0.230609 |
Target: 5'- cUGACCGCCaguCGaGGACugcGGCcGuGCCGCg -3' miRNA: 3'- cACUGGCGG---GC-CCUGu--CCGuC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 58755 | 0.69 | 0.225081 |
Target: 5'- uGUGGCC-CgCGGcGCAGGC-GGCCGUg -3' miRNA: 3'- -CACUGGcGgGCCcUGUCCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 3609 | 0.7 | 0.204085 |
Target: 5'- gGUGAaaucuacggcgUCGCCCGcGACAagaaGCAGGCCGCc -3' miRNA: 3'- -CACU-----------GGCGGGCcCUGUc---CGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 29267 | 0.7 | 0.204085 |
Target: 5'- aUGGCCGCCCaGGGGuuGGUcguugacguGGCCGUu -3' miRNA: 3'- cACUGGCGGG-CCCUguCCGu--------CCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 67889 | 0.71 | 0.180247 |
Target: 5'- -cGAacaCGCCCGGGugGaGGCuacGGCCGa -3' miRNA: 3'- caCUg--GCGGGCCCugU-CCGu--CCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 41672 | 0.71 | 0.175786 |
Target: 5'- cGUGcGCUGCCUGcGGGguGGCGcugcauggcGGCCGCg -3' miRNA: 3'- -CAC-UGGCGGGC-CCUguCCGU---------CCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 32518 | 0.72 | 0.15891 |
Target: 5'- cUGAUCGCgCUGGGugAGuuccuGguGGCCGCu -3' miRNA: 3'- cACUGGCG-GGCCCugUC-----CguCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 58915 | 0.72 | 0.154926 |
Target: 5'- uUGGCCucuGUCCGGGugAGGCccagcaacuccuGGGCgCGCg -3' miRNA: 3'- cACUGG---CGGGCCCugUCCG------------UCCG-GCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 25052 | 0.74 | 0.102449 |
Target: 5'- gGUGACCGCagaGGGCGGcGCGGGCgGCa -3' miRNA: 3'- -CACUGGCGggcCCUGUC-CGUCCGgCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 52972 | 0.75 | 0.097208 |
Target: 5'- --cGCgGCUCGGGcacGCGGGCAGGCCGa -3' miRNA: 3'- cacUGgCGGGCCC---UGUCCGUCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 40132 | 1.1 | 0.000185 |
Target: 5'- gGUGACCGCCCGGGACAGGCAGGCCGCg -3' miRNA: 3'- -CACUGGCGGGCCCUGUCCGUCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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