miRNA display CGI


Results 41 - 55 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 49541 0.67 0.327753
Target:  5'- -cGACauCGCCCuGGccuucccccGCGGGCAGGCCcgagGCa -3'
miRNA:   3'- caCUG--GCGGGcCC---------UGUCCGUCCGG----CG- -5'
18455 5' -63.9 NC_004681.1 + 50995 0.66 0.382493
Target:  5'- cGUGuCCGaCUCGaGuAUuGGCAGGCCGCc -3'
miRNA:   3'- -CACuGGC-GGGC-CcUGuCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 51743 0.66 0.358304
Target:  5'- -cGGCCGcCCCGGcGCGGGCAagaguaacGCCGg -3'
miRNA:   3'- caCUGGC-GGGCCcUGUCCGUc-------CGGCg -5'
18455 5' -63.9 NC_004681.1 + 52972 0.75 0.097208
Target:  5'- --cGCgGCUCGGGcacGCGGGCAGGCCGa -3'
miRNA:   3'- cacUGgCGGGCCC---UGUCCGUCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 53342 0.67 0.313216
Target:  5'- uUGGCCGCCUGGuGCAGGU--GCCa- -3'
miRNA:   3'- cACUGGCGGGCCcUGUCCGucCGGcg -5'
18455 5' -63.9 NC_004681.1 + 57312 0.66 0.399211
Target:  5'- aGUGACUuCCUGGGGC-GGCGauCCGCc -3'
miRNA:   3'- -CACUGGcGGGCCCUGuCCGUccGGCG- -5'
18455 5' -63.9 NC_004681.1 + 57588 0.66 0.358304
Target:  5'- gGUGGCCaGCCUGGGAaccGUccGCCGCc -3'
miRNA:   3'- -CACUGG-CGGGCCCUgucCGucCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 58755 0.69 0.225081
Target:  5'- uGUGGCC-CgCGGcGCAGGC-GGCCGUg -3'
miRNA:   3'- -CACUGGcGgGCCcUGUCCGuCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 58915 0.72 0.154926
Target:  5'- uUGGCCucuGUCCGGGugAGGCccagcaacuccuGGGCgCGCg -3'
miRNA:   3'- cACUGG---CGGGCCCugUCCG------------UCCG-GCG- -5'
18455 5' -63.9 NC_004681.1 + 59289 0.66 0.350482
Target:  5'- --aGCCGCCCGGGA--GGCcguccgugacauAGGUgGCg -3'
miRNA:   3'- cacUGGCGGGCCCUguCCG------------UCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 59796 0.67 0.335206
Target:  5'- -aGGCCGCaCUcccagcagGGGGCGuGGCGGcGCUGCc -3'
miRNA:   3'- caCUGGCG-GG--------CCCUGU-CCGUC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 61081 0.67 0.306133
Target:  5'- cUGACCGCCgaccccgagcugCGGuucacccaaGGUGGGCAGGCCGUc -3'
miRNA:   3'- cACUGGCGG------------GCC---------CUGUCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 65910 0.67 0.313216
Target:  5'- -cGACCGacuuguaCgGGGugGGGC-GGCCGa -3'
miRNA:   3'- caCUGGCg------GgCCCugUCCGuCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 67889 0.71 0.180247
Target:  5'- -cGAacaCGCCCGGGugGaGGCuacGGCCGa -3'
miRNA:   3'- caCUg--GCGGGCCCugU-CCGu--CCGGCg -5'
18455 5' -63.9 NC_004681.1 + 68572 0.66 0.350482
Target:  5'- cUGGCaCGCCUGGagcGACA-GCGGGCCa- -3'
miRNA:   3'- cACUG-GCGGGCC---CUGUcCGUCCGGcg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.