Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18455 | 5' | -63.9 | NC_004681.1 | + | 68572 | 0.66 | 0.350482 |
Target: 5'- cUGGCaCGCCUGGagcGACA-GCGGGCCa- -3' miRNA: 3'- cACUG-GCGGGCC---CUGUcCGUCCGGcg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 67889 | 0.71 | 0.180247 |
Target: 5'- -cGAacaCGCCCGGGugGaGGCuacGGCCGa -3' miRNA: 3'- caCUg--GCGGGCCCugU-CCGu--CCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 65910 | 0.67 | 0.313216 |
Target: 5'- -cGACCGacuuguaCgGGGugGGGC-GGCCGa -3' miRNA: 3'- caCUGGCg------GgCCCugUCCGuCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 61081 | 0.67 | 0.306133 |
Target: 5'- cUGACCGCCgaccccgagcugCGGuucacccaaGGUGGGCAGGCCGUc -3' miRNA: 3'- cACUGGCGG------------GCC---------CUGUCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 59796 | 0.67 | 0.335206 |
Target: 5'- -aGGCCGCaCUcccagcagGGGGCGuGGCGGcGCUGCc -3' miRNA: 3'- caCUGGCG-GG--------CCCUGU-CCGUC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 59289 | 0.66 | 0.350482 |
Target: 5'- --aGCCGCCCGGGA--GGCcguccgugacauAGGUgGCg -3' miRNA: 3'- cacUGGCGGGCCCUguCCG------------UCCGgCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 58915 | 0.72 | 0.154926 |
Target: 5'- uUGGCCucuGUCCGGGugAGGCccagcaacuccuGGGCgCGCg -3' miRNA: 3'- cACUGG---CGGGCCCugUCCG------------UCCG-GCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 58755 | 0.69 | 0.225081 |
Target: 5'- uGUGGCC-CgCGGcGCAGGC-GGCCGUg -3' miRNA: 3'- -CACUGGcGgGCCcUGUCCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57588 | 0.66 | 0.358304 |
Target: 5'- gGUGGCCaGCCUGGGAaccGUccGCCGCc -3' miRNA: 3'- -CACUGG-CGGGCCCUgucCGucCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57312 | 0.66 | 0.399211 |
Target: 5'- aGUGACUuCCUGGGGC-GGCGauCCGCc -3' miRNA: 3'- -CACUGGcGGGCCCUGuCCGUccGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 53342 | 0.67 | 0.313216 |
Target: 5'- uUGGCCGCCUGGuGCAGGU--GCCa- -3' miRNA: 3'- cACUGGCGGGCCcUGUCCGucCGGcg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 52972 | 0.75 | 0.097208 |
Target: 5'- --cGCgGCUCGGGcacGCGGGCAGGCCGa -3' miRNA: 3'- cacUGgCGGGCCC---UGUCCGUCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 51743 | 0.66 | 0.358304 |
Target: 5'- -cGGCCGcCCCGGcGCGGGCAagaguaacGCCGg -3' miRNA: 3'- caCUGGC-GGGCCcUGUCCGUc-------CGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 50995 | 0.66 | 0.382493 |
Target: 5'- cGUGuCCGaCUCGaGuAUuGGCAGGCCGCc -3' miRNA: 3'- -CACuGGC-GGGC-CcUGuCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 49541 | 0.67 | 0.327753 |
Target: 5'- -cGACauCGCCCuGGccuucccccGCGGGCAGGCCcgagGCa -3' miRNA: 3'- caCUG--GCGGGcCC---------UGUCCGUCCGG----CG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 49454 | 0.66 | 0.358304 |
Target: 5'- gGUGugCGCCCaGuGGuCAGcgcccGCGGcGCCGCc -3' miRNA: 3'- -CACugGCGGG-C-CCuGUC-----CGUC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 48654 | 0.67 | 0.342783 |
Target: 5'- --cACCGCCuccacgcuggCGGGAacccuGGCGGGCCaGCu -3' miRNA: 3'- cacUGGCGG----------GCCCUgu---CCGUCCGG-CG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 46558 | 0.67 | 0.342783 |
Target: 5'- -aGACCuccaGgCCGaGGuacCGGaGCAGGCCGCg -3' miRNA: 3'- caCUGG----CgGGC-CCu--GUC-CGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 42015 | 0.68 | 0.297109 |
Target: 5'- --cGCUGCUCGGGACAGGU-GGCguuauucaguuuggCGCg -3' miRNA: 3'- cacUGGCGGGCCCUGUCCGuCCG--------------GCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 41672 | 0.71 | 0.175786 |
Target: 5'- cGUGcGCUGCCUGcGGGguGGCGcugcauggcGGCCGCg -3' miRNA: 3'- -CAC-UGGCGGGC-CCUguCCGU---------CCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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