miRNA display CGI


Results 21 - 40 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 40132 1.1 0.000185
Target:  5'- gGUGACCGCCCGGGACAGGCAGGCCGCg -3'
miRNA:   3'- -CACUGGCGGGCCCUGUCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 39328 0.67 0.327753
Target:  5'- --cGCCGCgCuGGACAcGGCuccgagGGGCCGCu -3'
miRNA:   3'- cacUGGCGgGcCCUGU-CCG------UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 39240 0.66 0.366246
Target:  5'- -cGugCGCCgCGGcaaGGGCgccaaGGGCCGCc -3'
miRNA:   3'- caCugGCGG-GCCcugUCCG-----UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 39143 0.67 0.34202
Target:  5'- uUGACCaccuucugguccaGCuuGGGugGGcgcaccaccaGCAGGCCGUc -3'
miRNA:   3'- cACUGG-------------CGggCCCugUC----------CGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 38318 0.67 0.335206
Target:  5'- --cGCCGCCgCGGGACGucuucGGCCGCc -3'
miRNA:   3'- cacUGGCGG-GCCCUGUccgu-CCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 36891 0.69 0.253873
Target:  5'- -gGACUGCCUagucagcggGGGGCGGGCcagcGGCCugGCa -3'
miRNA:   3'- caCUGGCGGG---------CCCUGUCCGu---CCGG--CG- -5'
18455 5' -63.9 NC_004681.1 + 33126 0.66 0.380025
Target:  5'- uUGACgGgggcgaugccauguCCCGaGGuC-GGCAGGCCGCu -3'
miRNA:   3'- cACUGgC--------------GGGC-CCuGuCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 32518 0.72 0.15891
Target:  5'- cUGAUCGCgCUGGGugAGuuccuGguGGCCGCu -3'
miRNA:   3'- cACUGGCG-GGCCCugUC-----CguCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 31155 0.67 0.313216
Target:  5'- -gGACaucgaGuCCUGGGGCGGGCAGauucGCgGCa -3'
miRNA:   3'- caCUGg----C-GGGCCCUGUCCGUC----CGgCG- -5'
18455 5' -63.9 NC_004681.1 + 30940 0.67 0.311078
Target:  5'- cGUG-CCGUccuccacgauggguCCGGG-CAGGUAGGCC-Ca -3'
miRNA:   3'- -CACuGGCG--------------GGCCCuGUCCGUCCGGcG- -5'
18455 5' -63.9 NC_004681.1 + 30137 0.68 0.27903
Target:  5'- -aGGCgGCCUGuGGGuCGGGCucAGGCgGCg -3'
miRNA:   3'- caCUGgCGGGC-CCU-GUCCG--UCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 29946 0.66 0.394147
Target:  5'- uUGACCGCauucgcgccaacaGGGGCAaGCGcGCCGCg -3'
miRNA:   3'- cACUGGCGgg-----------CCCUGUcCGUcCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 29267 0.7 0.204085
Target:  5'- aUGGCCGCCCaGGGGuuGGUcguugacguGGCCGUu -3'
miRNA:   3'- cACUGGCGGG-CCCUguCCGu--------CCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 28483 0.67 0.327014
Target:  5'- ---cCCGCCCGGGGCuGGGCucacacucaccccGGGCaccccCGCg -3'
miRNA:   3'- cacuGGCGGGCCCUG-UCCG-------------UCCG-----GCG- -5'
18455 5' -63.9 NC_004681.1 + 26331 0.67 0.327753
Target:  5'- --cACCGCgUagGGGGCGGGCAucGCCGCc -3'
miRNA:   3'- cacUGGCGgG--CCCUGUCCGUc-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 25430 0.66 0.390794
Target:  5'- --cACCGUCuCGGGAgGGGUcGGUgGCg -3'
miRNA:   3'- cacUGGCGG-GCCCUgUCCGuCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 25052 0.74 0.102449
Target:  5'- gGUGACCGCagaGGGCGGcGCGGGCgGCa -3'
miRNA:   3'- -CACUGGCGggcCCUGUC-CGUCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 24760 0.66 0.366246
Target:  5'- -cGAUCaGCUCGGG-CGGGUugucgGGGuCCGCg -3'
miRNA:   3'- caCUGG-CGGGCCCuGUCCG-----UCC-GGCG- -5'
18455 5' -63.9 NC_004681.1 + 21359 0.69 0.247882
Target:  5'- -gGGUCGCCaGGGAgccaCAGGCuGGCCGUg -3'
miRNA:   3'- caCUGGCGGgCCCU----GUCCGuCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 20026 0.68 0.27256
Target:  5'- -cGaACCGCggagaCCaGGACGGGU-GGCCGCg -3'
miRNA:   3'- caC-UGGCG-----GGcCCUGUCCGuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.