miRNA display CGI


Results 41 - 55 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 18392 0.69 0.230609
Target:  5'- cUGACCGCCaguCGaGGACugcGGCcGuGCCGCg -3'
miRNA:   3'- cACUGGCGG---GC-CCUGu--CCGuC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 18271 0.66 0.350482
Target:  5'- -gGACCGCCaGGGAgA-GUAGGaCCGUu -3'
miRNA:   3'- caCUGGCGGgCCCUgUcCGUCC-GGCG- -5'
18455 5' -63.9 NC_004681.1 + 18067 0.67 0.320422
Target:  5'- aGUGGCCGCauGGGcuGCGGGgcccacCGGaGCCGCc -3'
miRNA:   3'- -CACUGGCGggCCC--UGUCC------GUC-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 17939 0.68 0.27256
Target:  5'- -gGGgCGCCCGGGuu-GGUgAGGCCGg -3'
miRNA:   3'- caCUgGCGGGCCCuguCCG-UCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 16871 0.66 0.350482
Target:  5'- --uGCCGCCaGGcaccgacgugucGACAGGCAGGaCCGg -3'
miRNA:   3'- cacUGGCGGgCC------------CUGUCCGUCC-GGCg -5'
18455 5' -63.9 NC_004681.1 + 14442 0.66 0.366246
Target:  5'- --cGCCGCCCGcGaGGCggAGGCGaacGCCGCg -3'
miRNA:   3'- cacUGGCGGGC-C-CUG--UCCGUc--CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 13137 0.66 0.381669
Target:  5'- --cACCGCCCuucguggcacggcGGGuACGGGCGGGUuuuaucaacucuCGCa -3'
miRNA:   3'- cacUGGCGGG-------------CCC-UGUCCGUCCG------------GCG- -5'
18455 5' -63.9 NC_004681.1 + 12566 0.67 0.317525
Target:  5'- aGUGACCguGCCCGGGucaaacaccuuccCGGGCAcGGCUc- -3'
miRNA:   3'- -CACUGG--CGGGCCCu------------GUCCGU-CCGGcg -5'
18455 5' -63.9 NC_004681.1 + 9626 0.66 0.389958
Target:  5'- -aGGCCGa--GGGGCGGuacaccaGCAGGCCGa -3'
miRNA:   3'- caCUGGCgggCCCUGUC-------CGUCCGGCg -5'
18455 5' -63.9 NC_004681.1 + 3609 0.7 0.204085
Target:  5'- gGUGAaaucuacggcgUCGCCCGcGACAagaaGCAGGCCGCc -3'
miRNA:   3'- -CACU-----------GGCGGGCcCUGUc---CGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 3224 0.66 0.399211
Target:  5'- --cACCaaCCGGGACcuGGCcgAGGCUGCg -3'
miRNA:   3'- cacUGGcgGGCCCUGu-CCG--UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 3130 0.68 0.27903
Target:  5'- uUGG-CGCCgCGGGuGCGGGCAuuGCCGCu -3'
miRNA:   3'- cACUgGCGG-GCCC-UGUCCGUc-CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 1067 0.68 0.27256
Target:  5'- aUGAauGCCCGGGGCucGUAGcGCCGg -3'
miRNA:   3'- cACUggCGGGCCCUGucCGUC-CGGCg -5'
18455 5' -63.9 NC_004681.1 + 849 0.69 0.242008
Target:  5'- -gGGCgGCa-GGGcCGGGUAGGCCGUc -3'
miRNA:   3'- caCUGgCGggCCCuGUCCGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 633 0.66 0.382493
Target:  5'- uGUGcCCGUCguugaGGGACucGC-GGCCGCg -3'
miRNA:   3'- -CACuGGCGGg----CCCUGucCGuCCGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.