Results 1 - 20 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18455 | 5' | -63.9 | NC_004681.1 | + | 58915 | 0.72 | 0.154926 |
Target: 5'- uUGGCCucuGUCCGGGugAGGCccagcaacuccuGGGCgCGCg -3' miRNA: 3'- cACUGG---CGGGCCCugUCCG------------UCCG-GCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 18067 | 0.67 | 0.320422 |
Target: 5'- aGUGGCCGCauGGGcuGCGGGgcccacCGGaGCCGCc -3' miRNA: 3'- -CACUGGCGggCCC--UGUCC------GUC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 59796 | 0.67 | 0.335206 |
Target: 5'- -aGGCCGCaCUcccagcagGGGGCGuGGCGGcGCUGCc -3' miRNA: 3'- caCUGGCG-GG--------CCCUGU-CCGUC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57312 | 0.66 | 0.399211 |
Target: 5'- aGUGACUuCCUGGGGC-GGCGauCCGCc -3' miRNA: 3'- -CACUGGcGGGCCCUGuCCGUccGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 58755 | 0.69 | 0.225081 |
Target: 5'- uGUGGCC-CgCGGcGCAGGC-GGCCGUg -3' miRNA: 3'- -CACUGGcGgGCCcUGUCCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 18392 | 0.69 | 0.230609 |
Target: 5'- cUGACCGCCaguCGaGGACugcGGCcGuGCCGCg -3' miRNA: 3'- cACUGGCGG---GC-CCUGu--CCGuC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 21359 | 0.69 | 0.247882 |
Target: 5'- -gGGUCGCCaGGGAgccaCAGGCuGGCCGUg -3' miRNA: 3'- caCUGGCGGgCCCU----GUCCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 36891 | 0.69 | 0.253873 |
Target: 5'- -gGACUGCCUagucagcggGGGGCGGGCcagcGGCCugGCa -3' miRNA: 3'- caCUGGCGGG---------CCCUGUCCGu---CCGG--CG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 3130 | 0.68 | 0.27903 |
Target: 5'- uUGG-CGCCgCGGGuGCGGGCAuuGCCGCu -3' miRNA: 3'- cACUgGCGG-GCCC-UGUCCGUc-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 53342 | 0.67 | 0.313216 |
Target: 5'- uUGGCCGCCUGGuGCAGGU--GCCa- -3' miRNA: 3'- cACUGGCGGGCCcUGUCCGucCGGcg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 42015 | 0.68 | 0.297109 |
Target: 5'- --cGCUGCUCGGGACAGGU-GGCguuauucaguuuggCGCg -3' miRNA: 3'- cacUGGCGGGCCCUGUCCGuCCG--------------GCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 1067 | 0.68 | 0.27256 |
Target: 5'- aUGAauGCCCGGGGCucGUAGcGCCGg -3' miRNA: 3'- cACUggCGGGCCCUGucCGUC-CGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 41672 | 0.71 | 0.175786 |
Target: 5'- cGUGcGCUGCCUGcGGGguGGCGcugcauggcGGCCGCg -3' miRNA: 3'- -CAC-UGGCGGGC-CCUguCCGU---------CCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 30940 | 0.67 | 0.311078 |
Target: 5'- cGUG-CCGUccuccacgauggguCCGGG-CAGGUAGGCC-Ca -3' miRNA: 3'- -CACuGGCG--------------GGCCCuGUCCGUCCGGcG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 67889 | 0.71 | 0.180247 |
Target: 5'- -cGAacaCGCCCGGGugGaGGCuacGGCCGa -3' miRNA: 3'- caCUg--GCGGGCCCugU-CCGu--CCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 17939 | 0.68 | 0.27256 |
Target: 5'- -gGGgCGCCCGGGuu-GGUgAGGCCGg -3' miRNA: 3'- caCUgGCGGGCCCuguCCG-UCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 65910 | 0.67 | 0.313216 |
Target: 5'- -cGACCGacuuguaCgGGGugGGGC-GGCCGa -3' miRNA: 3'- caCUGGCg------GgCCCugUCCGuCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 26331 | 0.67 | 0.327753 |
Target: 5'- --cACCGCgUagGGGGCGGGCAucGCCGCc -3' miRNA: 3'- cacUGGCGgG--CCCUGUCCGUc-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 29267 | 0.7 | 0.204085 |
Target: 5'- aUGGCCGCCCaGGGGuuGGUcguugacguGGCCGUu -3' miRNA: 3'- cACUGGCGGG-CCCUguCCGu--------CCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 849 | 0.69 | 0.242008 |
Target: 5'- -gGGCgGCa-GGGcCGGGUAGGCCGUc -3' miRNA: 3'- caCUGgCGggCCCuGUCCGUCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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