Results 21 - 40 of 55 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18455 | 5' | -63.9 | NC_004681.1 | + | 52972 | 0.75 | 0.097208 |
Target: 5'- --cGCgGCUCGGGcacGCGGGCAGGCCGa -3' miRNA: 3'- cacUGgCGGGCCC---UGUCCGUCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 25430 | 0.66 | 0.390794 |
Target: 5'- --cACCGUCuCGGGAgGGGUcGGUgGCg -3' miRNA: 3'- cacUGGCGG-GCCCUgUCCGuCCGgCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 46558 | 0.67 | 0.342783 |
Target: 5'- -aGACCuccaGgCCGaGGuacCGGaGCAGGCCGCg -3' miRNA: 3'- caCUGG----CgGGC-CCu--GUC-CGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57312 | 0.66 | 0.399211 |
Target: 5'- aGUGACUuCCUGGGGC-GGCGauCCGCc -3' miRNA: 3'- -CACUGGcGGGCCCUGuCCGUccGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 18271 | 0.66 | 0.350482 |
Target: 5'- -gGACCGCCaGGGAgA-GUAGGaCCGUu -3' miRNA: 3'- caCUGGCGGgCCCUgUcCGUCC-GGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 50995 | 0.66 | 0.382493 |
Target: 5'- cGUGuCCGaCUCGaGuAUuGGCAGGCCGCc -3' miRNA: 3'- -CACuGGC-GGGC-CcUGuCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 29946 | 0.66 | 0.394147 |
Target: 5'- uUGACCGCauucgcgccaacaGGGGCAaGCGcGCCGCg -3' miRNA: 3'- cACUGGCGgg-----------CCCUGUcCGUcCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 16871 | 0.66 | 0.350482 |
Target: 5'- --uGCCGCCaGGcaccgacgugucGACAGGCAGGaCCGg -3' miRNA: 3'- cacUGGCGGgCC------------CUGUCCGUCC-GGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 24760 | 0.66 | 0.366246 |
Target: 5'- -cGAUCaGCUCGGG-CGGGUugucgGGGuCCGCg -3' miRNA: 3'- caCUGG-CGGGCCCuGUCCG-----UCC-GGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 9626 | 0.66 | 0.389958 |
Target: 5'- -aGGCCGa--GGGGCGGuacaccaGCAGGCCGa -3' miRNA: 3'- caCUGGCgggCCCUGUC-------CGUCCGGCg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 39143 | 0.67 | 0.34202 |
Target: 5'- uUGACCaccuucugguccaGCuuGGGugGGcgcaccaccaGCAGGCCGUc -3' miRNA: 3'- cACUGG-------------CGggCCCugUC----------CGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 633 | 0.66 | 0.382493 |
Target: 5'- uGUGcCCGUCguugaGGGACucGC-GGCCGCg -3' miRNA: 3'- -CACuGGCGGg----CCCUGucCGuCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 33126 | 0.66 | 0.380025 |
Target: 5'- uUGACgGgggcgaugccauguCCCGaGGuC-GGCAGGCCGCu -3' miRNA: 3'- cACUGgC--------------GGGC-CCuGuCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 49454 | 0.66 | 0.358304 |
Target: 5'- gGUGugCGCCCaGuGGuCAGcgcccGCGGcGCCGCc -3' miRNA: 3'- -CACugGCGGG-C-CCuGUC-----CGUC-CGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 59289 | 0.66 | 0.350482 |
Target: 5'- --aGCCGCCCGGGA--GGCcguccgugacauAGGUgGCg -3' miRNA: 3'- cacUGGCGGGCCCUguCCG------------UCCGgCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 57588 | 0.66 | 0.358304 |
Target: 5'- gGUGGCCaGCCUGGGAaccGUccGCCGCc -3' miRNA: 3'- -CACUGG-CGGGCCCUgucCGucCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 61081 | 0.67 | 0.306133 |
Target: 5'- cUGACCGCCgaccccgagcugCGGuucacccaaGGUGGGCAGGCCGUc -3' miRNA: 3'- cACUGGCGG------------GCC---------CUGUCCGUCCGGCG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 68572 | 0.66 | 0.350482 |
Target: 5'- cUGGCaCGCCUGGagcGACA-GCGGGCCa- -3' miRNA: 3'- cACUG-GCGGGCC---CUGUcCGUCCGGcg -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 48654 | 0.67 | 0.342783 |
Target: 5'- --cACCGCCuccacgcuggCGGGAacccuGGCGGGCCaGCu -3' miRNA: 3'- cacUGGCGG----------GCCCUgu---CCGUCCGG-CG- -5' |
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18455 | 5' | -63.9 | NC_004681.1 | + | 39328 | 0.67 | 0.327753 |
Target: 5'- --cGCCGCgCuGGACAcGGCuccgagGGGCCGCu -3' miRNA: 3'- cacUGGCGgGcCCUGU-CCG------UCCGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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