miRNA display CGI


Results 41 - 55 of 55 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18455 5' -63.9 NC_004681.1 + 3609 0.7 0.204085
Target:  5'- gGUGAaaucuacggcgUCGCCCGcGACAagaaGCAGGCCGCc -3'
miRNA:   3'- -CACU-----------GGCGGGCcCUGUc---CGUCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 32518 0.72 0.15891
Target:  5'- cUGAUCGCgCUGGGugAGuuccuGguGGCCGCu -3'
miRNA:   3'- cACUGGCG-GGCCCugUC-----CguCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 25052 0.74 0.102449
Target:  5'- gGUGACCGCagaGGGCGGcGCGGGCgGCa -3'
miRNA:   3'- -CACUGGCGggcCCUGUC-CGUCCGgCG- -5'
18455 5' -63.9 NC_004681.1 + 28483 0.67 0.327014
Target:  5'- ---cCCGCCCGGGGCuGGGCucacacucaccccGGGCaccccCGCg -3'
miRNA:   3'- cacuGGCGGGCCCUG-UCCG-------------UCCG-----GCG- -5'
18455 5' -63.9 NC_004681.1 + 49541 0.67 0.327753
Target:  5'- -cGACauCGCCCuGGccuucccccGCGGGCAGGCCcgagGCa -3'
miRNA:   3'- caCUG--GCGGGcCC---------UGUCCGUCCGG----CG- -5'
18455 5' -63.9 NC_004681.1 + 3224 0.66 0.399211
Target:  5'- --cACCaaCCGGGACcuGGCcgAGGCUGCg -3'
miRNA:   3'- cacUGGcgGGCCCUGu-CCG--UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 13137 0.66 0.381669
Target:  5'- --cACCGCCCuucguggcacggcGGGuACGGGCGGGUuuuaucaacucuCGCa -3'
miRNA:   3'- cacUGGCGGG-------------CCC-UGUCCGUCCG------------GCG- -5'
18455 5' -63.9 NC_004681.1 + 39240 0.66 0.366246
Target:  5'- -cGugCGCCgCGGcaaGGGCgccaaGGGCCGCc -3'
miRNA:   3'- caCugGCGG-GCCcugUCCG-----UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 14442 0.66 0.366246
Target:  5'- --cGCCGCCCGcGaGGCggAGGCGaacGCCGCg -3'
miRNA:   3'- cacUGGCGGGC-C-CUG--UCCGUc--CGGCG- -5'
18455 5' -63.9 NC_004681.1 + 51743 0.66 0.358304
Target:  5'- -cGGCCGcCCCGGcGCGGGCAagaguaacGCCGg -3'
miRNA:   3'- caCUGGC-GGGCCcUGUCCGUc-------CGGCg -5'
18455 5' -63.9 NC_004681.1 + 57588 0.66 0.358304
Target:  5'- gGUGGCCaGCCUGGGAaccGUccGCCGCc -3'
miRNA:   3'- -CACUGG-CGGGCCCUgucCGucCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 68572 0.66 0.350482
Target:  5'- cUGGCaCGCCUGGagcGACA-GCGGGCCa- -3'
miRNA:   3'- cACUG-GCGGGCC---CUGUcCGUCCGGcg -5'
18455 5' -63.9 NC_004681.1 + 48654 0.67 0.342783
Target:  5'- --cACCGCCuccacgcuggCGGGAacccuGGCGGGCCaGCu -3'
miRNA:   3'- cacUGGCGG----------GCCCUgu---CCGUCCGG-CG- -5'
18455 5' -63.9 NC_004681.1 + 39328 0.67 0.327753
Target:  5'- --cGCCGCgCuGGACAcGGCuccgagGGGCCGCu -3'
miRNA:   3'- cacUGGCGgGcCCUGU-CCG------UCCGGCG- -5'
18455 5' -63.9 NC_004681.1 + 40132 1.1 0.000185
Target:  5'- gGUGACCGCCCGGGACAGGCAGGCCGCg -3'
miRNA:   3'- -CACUGGCGGGCCCUGUCCGUCCGGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.