miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18457 3' -61.6 NC_004681.1 + 40631 1.1 0.000312
Target:  5'- gUGGCCGCCCUCUCCCAGCUACUCCGCc -3'
miRNA:   3'- -ACCGGCGGGAGAGGGUCGAUGAGGCG- -5'
18457 3' -61.6 NC_004681.1 + 33186 0.72 0.189636
Target:  5'- aGGUCGCCCUCguuccaccacuccUCCCAcau-CUCCGCg -3'
miRNA:   3'- aCCGGCGGGAG-------------AGGGUcgauGAGGCG- -5'
18457 3' -61.6 NC_004681.1 + 61741 0.72 0.194987
Target:  5'- aGGCCGCCCUCgcgcgccaCCAGaCcGCggCCGCc -3'
miRNA:   3'- aCCGGCGGGAGag------GGUC-GaUGa-GGCG- -5'
18457 3' -61.6 NC_004681.1 + 56338 0.7 0.256053
Target:  5'- gGuGUCGCCCUCUUgCAGCUcGCUCgGg -3'
miRNA:   3'- aC-CGGCGGGAGAGgGUCGA-UGAGgCg -5'
18457 3' -61.6 NC_004681.1 + 2124 0.7 0.26232
Target:  5'- cGGCCGCCCUCcacgaCCAcCUGg-CCGCg -3'
miRNA:   3'- aCCGGCGGGAGag---GGUcGAUgaGGCG- -5'
18457 3' -61.6 NC_004681.1 + 3643 0.7 0.275228
Target:  5'- aGGCCGCCCUCgCCUucg-ACgucgCCGCc -3'
miRNA:   3'- aCCGGCGGGAGaGGGucgaUGa---GGCG- -5'
18457 3' -61.6 NC_004681.1 + 71485 0.69 0.288639
Target:  5'- cGG-UGCCCUgUCCCGGgucaUACUCgCGCg -3'
miRNA:   3'- aCCgGCGGGAgAGGGUCg---AUGAG-GCG- -5'
18457 3' -61.6 NC_004681.1 + 64849 0.69 0.316255
Target:  5'- cUGcGCCGCgaCCUCaCCCAGCggugaagUGCUCgCGCa -3'
miRNA:   3'- -AC-CGGCG--GGAGaGGGUCG-------AUGAG-GCG- -5'
18457 3' -61.6 NC_004681.1 + 13531 0.69 0.316989
Target:  5'- cGGCuCGCCgUUCUCaucgaaCAGCUGCUCaCGg -3'
miRNA:   3'- aCCG-GCGG-GAGAGg-----GUCGAUGAG-GCg -5'
18457 3' -61.6 NC_004681.1 + 45438 0.69 0.319936
Target:  5'- aUGGCCGCCCUCgguguggugaugaaCgaCAGCguccACUCCGa -3'
miRNA:   3'- -ACCGGCGGGAGa-------------Gg-GUCGa---UGAGGCg -5'
18457 3' -61.6 NC_004681.1 + 52946 0.68 0.347386
Target:  5'- aUGGCCaGCCUUCcgCCCGGaaGCUCaggGCa -3'
miRNA:   3'- -ACCGG-CGGGAGa-GGGUCgaUGAGg--CG- -5'
18457 3' -61.6 NC_004681.1 + 36808 0.68 0.347386
Target:  5'- aGGCaGUCCUCUUugucgccgcgggCCguGGCUGCUUCGCa -3'
miRNA:   3'- aCCGgCGGGAGAG------------GG--UCGAUGAGGCG- -5'
18457 3' -61.6 NC_004681.1 + 34089 0.68 0.347386
Target:  5'- cUGGCCGCCCU---CCAGUaAUUCCuGCc -3'
miRNA:   3'- -ACCGGCGGGAgagGGUCGaUGAGG-CG- -5'
18457 3' -61.6 NC_004681.1 + 56106 0.68 0.355304
Target:  5'- aGGUCGCCCUC-CUUGGCgucGCgCUGCg -3'
miRNA:   3'- aCCGGCGGGAGaGGGUCGa--UGaGGCG- -5'
18457 3' -61.6 NC_004681.1 + 32134 0.68 0.355304
Target:  5'- cGGCgGCCCaCgccaacgaCCAGCUGgaCCGCg -3'
miRNA:   3'- aCCGgCGGGaGag------GGUCGAUgaGGCG- -5'
18457 3' -61.6 NC_004681.1 + 48606 0.68 0.355304
Target:  5'- gUGcGCCaCCCgCUCCgGGUU-CUCCGCg -3'
miRNA:   3'- -AC-CGGcGGGaGAGGgUCGAuGAGGCG- -5'
18457 3' -61.6 NC_004681.1 + 3244 0.68 0.355304
Target:  5'- aGGCUGCgCUCUUCCuGGCUcGCU-CGCu -3'
miRNA:   3'- aCCGGCGgGAGAGGG-UCGA-UGAgGCG- -5'
18457 3' -61.6 NC_004681.1 + 50973 0.67 0.396766
Target:  5'- aGGCCGCCUgCUugUCgGGgUACUCgGCg -3'
miRNA:   3'- aCCGGCGGGaGA--GGgUCgAUGAGgCG- -5'
18457 3' -61.6 NC_004681.1 + 18039 0.67 0.405424
Target:  5'- gGaGCCGCCCUCggcaCUCAcCUGCggggaCCGCu -3'
miRNA:   3'- aC-CGGCGGGAGa---GGGUcGAUGa----GGCG- -5'
18457 3' -61.6 NC_004681.1 + 23332 0.67 0.405424
Target:  5'- gGGCCa-CCUCUUCCGGCaGCUUCagGCg -3'
miRNA:   3'- aCCGGcgGGAGAGGGUCGaUGAGG--CG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.