Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18457 | 3' | -61.6 | NC_004681.1 | + | 1148 | 0.66 | 0.488353 |
Target: 5'- gGGCCGUacaUC-CUCUCGGCg--UCCGCg -3' miRNA: 3'- aCCGGCG---GGaGAGGGUCGaugAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 1662 | 0.66 | 0.4692 |
Target: 5'- gGGCCGUcuuCCUCUCCCccGCcGC-CCaGCu -3' miRNA: 3'- aCCGGCG---GGAGAGGGu-CGaUGaGG-CG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 2124 | 0.7 | 0.26232 |
Target: 5'- cGGCCGCCCUCcacgaCCAcCUGg-CCGCg -3' miRNA: 3'- aCCGGCGGGAGag---GGUcGAUgaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 3244 | 0.68 | 0.355304 |
Target: 5'- aGGCUGCgCUCUUCCuGGCUcGCU-CGCu -3' miRNA: 3'- aCCGGCGgGAGAGGG-UCGA-UGAgGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 3643 | 0.7 | 0.275228 |
Target: 5'- aGGCCGCCCUCgCCUucg-ACgucgCCGCc -3' miRNA: 3'- aCCGGCGGGAGaGGGucgaUGa---GGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 4331 | 0.66 | 0.487386 |
Target: 5'- cGG-UGCCCUUgcacucaUCCCAcGCUGgcaUCCGCa -3' miRNA: 3'- aCCgGCGGGAG-------AGGGU-CGAUg--AGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 8392 | 0.67 | 0.4142 |
Target: 5'- aGGCCGUCCUUgg-CGGCg--UCCGCg -3' miRNA: 3'- aCCGGCGGGAGaggGUCGaugAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 13531 | 0.69 | 0.316989 |
Target: 5'- cGGCuCGCCgUUCUCaucgaaCAGCUGCUCaCGg -3' miRNA: 3'- aCCG-GCGG-GAGAGg-----GUCGAUGAG-GCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 14503 | 0.67 | 0.423092 |
Target: 5'- cGGCCGCCUgCUUgcgcuuggcgUCGGCgaugcgguuCUCCGCg -3' miRNA: 3'- aCCGGCGGGaGAG----------GGUCGau-------GAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 16300 | 0.67 | 0.4142 |
Target: 5'- gUGGCCGUUCUg-CUUGGcCUGCUCUGCc -3' miRNA: 3'- -ACCGGCGGGAgaGGGUC-GAUGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 18039 | 0.67 | 0.405424 |
Target: 5'- gGaGCCGCCCUCggcaCUCAcCUGCggggaCCGCu -3' miRNA: 3'- aC-CGGCGGGAGa---GGGUcGAUGa----GGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 19229 | 0.66 | 0.4692 |
Target: 5'- cGGauGUCCUCUCCCA-Cg--UCCGCa -3' miRNA: 3'- aCCggCGGGAGAGGGUcGaugAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 20129 | 0.66 | 0.441215 |
Target: 5'- cGGCCaCCCg-UCCUGGU--CUCCGCg -3' miRNA: 3'- aCCGGcGGGagAGGGUCGauGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 23332 | 0.67 | 0.405424 |
Target: 5'- gGGCCa-CCUCUUCCGGCaGCUUCagGCg -3' miRNA: 3'- aCCGGcgGGAGAGGGUCGaUGAGG--CG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 24038 | 0.66 | 0.441215 |
Target: 5'- uUGGCaCGCCCga-UCCGGCg---CCGCg -3' miRNA: 3'- -ACCG-GCGGGagaGGGUCGaugaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 25073 | 0.66 | 0.478729 |
Target: 5'- gGGCgGCaCCUCgCUCAGCcucCUCgGCa -3' miRNA: 3'- aCCGgCG-GGAGaGGGUCGau-GAGgCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 32134 | 0.68 | 0.355304 |
Target: 5'- cGGCgGCCCaCgccaacgaCCAGCUGgaCCGCg -3' miRNA: 3'- aCCGgCGGGaGag------GGUCGAUgaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 33186 | 0.72 | 0.189636 |
Target: 5'- aGGUCGCCCUCguuccaccacuccUCCCAcau-CUCCGCg -3' miRNA: 3'- aCCGGCGGGAG-------------AGGGUcgauGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 33493 | 0.67 | 0.423092 |
Target: 5'- gUGGCCGUCUUC-CUCAuGCUcAUcCCGCa -3' miRNA: 3'- -ACCGGCGGGAGaGGGU-CGA-UGaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 34089 | 0.68 | 0.347386 |
Target: 5'- cUGGCCGCCCU---CCAGUaAUUCCuGCc -3' miRNA: 3'- -ACCGGCGGGAgagGGUCGaUGAGG-CG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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