Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18457 | 3' | -61.6 | NC_004681.1 | + | 73183 | 0.66 | 0.450439 |
Target: 5'- -aGCCGCgCacCUCCCGGC-ACUCCa- -3' miRNA: 3'- acCGGCGgGa-GAGGGUCGaUGAGGcg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 71485 | 0.69 | 0.288639 |
Target: 5'- cGG-UGCCCUgUCCCGGgucaUACUCgCGCg -3' miRNA: 3'- aCCgGCGGGAgAGGGUCg---AUGAG-GCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 69133 | 0.66 | 0.478729 |
Target: 5'- cUGGCCuCCCUCgccuaccggCUCGGCUACaccaCCGg -3' miRNA: 3'- -ACCGGcGGGAGa--------GGGUCGAUGa---GGCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 64849 | 0.69 | 0.316255 |
Target: 5'- cUGcGCCGCgaCCUCaCCCAGCggugaagUGCUCgCGCa -3' miRNA: 3'- -AC-CGGCG--GGAGaGGGUCG-------AUGAG-GCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 61741 | 0.72 | 0.194987 |
Target: 5'- aGGCCGCCCUCgcgcgccaCCAGaCcGCggCCGCc -3' miRNA: 3'- aCCGGCGGGAGag------GGUC-GaUGa-GGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 59796 | 0.66 | 0.441215 |
Target: 5'- aGGCCGCa--CUCCCAGCaggggGCguggCgGCg -3' miRNA: 3'- aCCGGCGggaGAGGGUCGa----UGa---GgCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 56338 | 0.7 | 0.256053 |
Target: 5'- gGuGUCGCCCUCUUgCAGCUcGCUCgGg -3' miRNA: 3'- aC-CGGCGGGAGAGgGUCGA-UGAGgCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 56106 | 0.68 | 0.355304 |
Target: 5'- aGGUCGCCCUC-CUUGGCgucGCgCUGCg -3' miRNA: 3'- aCCGGCGGGAGaGGGUCGa--UGaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 52946 | 0.68 | 0.347386 |
Target: 5'- aUGGCCaGCCUUCcgCCCGGaaGCUCaggGCa -3' miRNA: 3'- -ACCGG-CGGGAGa-GGGUCgaUGAGg--CG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 50973 | 0.67 | 0.396766 |
Target: 5'- aGGCCGCCUgCUugUCgGGgUACUCgGCg -3' miRNA: 3'- aCCGGCGGGaGA--GGgUCgAUGAGgCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 48606 | 0.68 | 0.355304 |
Target: 5'- gUGcGCCaCCCgCUCCgGGUU-CUCCGCg -3' miRNA: 3'- -AC-CGGcGGGaGAGGgUCGAuGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 45438 | 0.69 | 0.319936 |
Target: 5'- aUGGCCGCCCUCgguguggugaugaaCgaCAGCguccACUCCGa -3' miRNA: 3'- -ACCGGCGGGAGa-------------Gg-GUCGa---UGAGGCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 45051 | 0.66 | 0.488353 |
Target: 5'- gGGCCugaGCCCgagCUCgCGGUggcgGCUCCa- -3' miRNA: 3'- aCCGG---CGGGa--GAGgGUCGa---UGAGGcg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 40631 | 1.1 | 0.000312 |
Target: 5'- gUGGCCGCCCUCUCCCAGCUACUCCGCc -3' miRNA: 3'- -ACCGGCGGGAGAGGGUCGAUGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 39446 | 0.67 | 0.423092 |
Target: 5'- aGGCCGauccacagcggcCCCUCggagccgugUCCAGCgcgGCgCCGCg -3' miRNA: 3'- aCCGGC------------GGGAGa--------GGGUCGa--UGaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 38982 | 0.66 | 0.478729 |
Target: 5'- aGGCUgGCCUUCUCcaguggcgCCAGCU-CUCCu- -3' miRNA: 3'- aCCGG-CGGGAGAG--------GGUCGAuGAGGcg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 36808 | 0.68 | 0.347386 |
Target: 5'- aGGCaGUCCUCUUugucgccgcgggCCguGGCUGCUUCGCa -3' miRNA: 3'- aCCGgCGGGAGAG------------GG--UCGAUGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 34295 | 0.67 | 0.426681 |
Target: 5'- cGGCCugcgugucaauucacGCCCUagcucaUCCCAGCacccgaagucuUACgCCGCg -3' miRNA: 3'- aCCGG---------------CGGGAg-----AGGGUCG-----------AUGaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 34089 | 0.68 | 0.347386 |
Target: 5'- cUGGCCGCCCU---CCAGUaAUUCCuGCc -3' miRNA: 3'- -ACCGGCGGGAgagGGUCGaUGAGG-CG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 33493 | 0.67 | 0.423092 |
Target: 5'- gUGGCCGUCUUC-CUCAuGCUcAUcCCGCa -3' miRNA: 3'- -ACCGGCGGGAGaGGGU-CGA-UGaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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