Results 1 - 20 of 38 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18457 | 3' | -61.6 | NC_004681.1 | + | 40631 | 1.1 | 0.000312 |
Target: 5'- gUGGCCGCCCUCUCCCAGCUACUCCGCc -3' miRNA: 3'- -ACCGGCGGGAGAGGGUCGAUGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 69133 | 0.66 | 0.478729 |
Target: 5'- cUGGCCuCCCUCgccuaccggCUCGGCUACaccaCCGg -3' miRNA: 3'- -ACCGGcGGGAGa--------GGGUCGAUGa---GGCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 25073 | 0.66 | 0.478729 |
Target: 5'- gGGCgGCaCCUCgCUCAGCcucCUCgGCa -3' miRNA: 3'- aCCGgCG-GGAGaGGGUCGau-GAGgCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 19229 | 0.66 | 0.4692 |
Target: 5'- cGGauGUCCUCUCCCA-Cg--UCCGCa -3' miRNA: 3'- aCCggCGGGAGAGGGUcGaugAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 73183 | 0.66 | 0.450439 |
Target: 5'- -aGCCGCgCacCUCCCGGC-ACUCCa- -3' miRNA: 3'- acCGGCGgGa-GAGGGUCGaUGAGGcg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 34295 | 0.67 | 0.426681 |
Target: 5'- cGGCCugcgugucaauucacGCCCUagcucaUCCCAGCacccgaagucuUACgCCGCg -3' miRNA: 3'- aCCGG---------------CGGGAg-----AGGGUCG-----------AUGaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 33493 | 0.67 | 0.423092 |
Target: 5'- gUGGCCGUCUUC-CUCAuGCUcAUcCCGCa -3' miRNA: 3'- -ACCGGCGGGAGaGGGU-CGA-UGaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 23332 | 0.67 | 0.405424 |
Target: 5'- gGGCCa-CCUCUUCCGGCaGCUUCagGCg -3' miRNA: 3'- aCCGGcgGGAGAGGGUCGaUGAGG--CG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 32134 | 0.68 | 0.355304 |
Target: 5'- cGGCgGCCCaCgccaacgaCCAGCUGgaCCGCg -3' miRNA: 3'- aCCGgCGGGaGag------GGUCGAUgaGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 3244 | 0.68 | 0.355304 |
Target: 5'- aGGCUGCgCUCUUCCuGGCUcGCU-CGCu -3' miRNA: 3'- aCCGGCGgGAGAGGG-UCGA-UGAgGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 61741 | 0.72 | 0.194987 |
Target: 5'- aGGCCGCCCUCgcgcgccaCCAGaCcGCggCCGCc -3' miRNA: 3'- aCCGGCGGGAGag------GGUC-GaUGa-GGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 3643 | 0.7 | 0.275228 |
Target: 5'- aGGCCGCCCUCgCCUucg-ACgucgCCGCc -3' miRNA: 3'- aCCGGCGGGAGaGGGucgaUGa---GGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 71485 | 0.69 | 0.288639 |
Target: 5'- cGG-UGCCCUgUCCCGGgucaUACUCgCGCg -3' miRNA: 3'- aCCgGCGGGAgAGGGUCg---AUGAG-GCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 64849 | 0.69 | 0.316255 |
Target: 5'- cUGcGCCGCgaCCUCaCCCAGCggugaagUGCUCgCGCa -3' miRNA: 3'- -AC-CGGCG--GGAGaGGGUCG-------AUGAG-GCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 45438 | 0.69 | 0.319936 |
Target: 5'- aUGGCCGCCCUCgguguggugaugaaCgaCAGCguccACUCCGa -3' miRNA: 3'- -ACCGGCGGGAGa-------------Gg-GUCGa---UGAGGCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 36808 | 0.68 | 0.347386 |
Target: 5'- aGGCaGUCCUCUUugucgccgcgggCCguGGCUGCUUCGCa -3' miRNA: 3'- aCCGgCGGGAGAG------------GG--UCGAUGAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 34089 | 0.68 | 0.347386 |
Target: 5'- cUGGCCGCCCU---CCAGUaAUUCCuGCc -3' miRNA: 3'- -ACCGGCGGGAgagGGUCGaUGAGG-CG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 1148 | 0.66 | 0.488353 |
Target: 5'- gGGCCGUacaUC-CUCUCGGCg--UCCGCg -3' miRNA: 3'- aCCGGCG---GGaGAGGGUCGaugAGGCG- -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 56338 | 0.7 | 0.256053 |
Target: 5'- gGuGUCGCCCUCUUgCAGCUcGCUCgGg -3' miRNA: 3'- aC-CGGCGGGAGAGgGUCGA-UGAGgCg -5' |
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18457 | 3' | -61.6 | NC_004681.1 | + | 2124 | 0.7 | 0.26232 |
Target: 5'- cGGCCGCCCUCcacgaCCAcCUGg-CCGCg -3' miRNA: 3'- aCCGGCGGGAGag---GGUcGAUgaGGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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