miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18457 5' -56.9 NC_004681.1 + 31091 0.66 0.715577
Target:  5'- aGGaCGcAGUCCGCAcGCUCaaggAGCAGAUc -3'
miRNA:   3'- gCC-GC-UUAGGUGUcCGAGg---UCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 75046 0.66 0.705096
Target:  5'- cCGuGCGAguagGUCCAUcagugaGGGCUCC-GUGGGCu -3'
miRNA:   3'- -GC-CGCU----UAGGUG------UCCGAGGuCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 24855 0.66 0.705096
Target:  5'- gGGCGGcggCCGCcaAGGCUCCcucaccAGCAauGGCg -3'
miRNA:   3'- gCCGCUua-GGUG--UCCGAGG------UCGU--CUG- -5'
18457 5' -56.9 NC_004681.1 + 65345 0.66 0.694548
Target:  5'- aGGCGAuggcuUUCACgAGGUg-CGGCAGGCc -3'
miRNA:   3'- gCCGCUu----AGGUG-UCCGagGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 36926 0.66 0.683942
Target:  5'- uGGCGAAcuUCCGagucaUCCAGUAGGCg -3'
miRNA:   3'- gCCGCUU--AGGUguccgAGGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 60040 0.66 0.683942
Target:  5'- uCGGCGGcucCCGCAccuGGCaCCGGCuGACc -3'
miRNA:   3'- -GCCGCUua-GGUGU---CCGaGGUCGuCUG- -5'
18457 5' -56.9 NC_004681.1 + 46695 0.66 0.683942
Target:  5'- uCGGCGAGUgggCCGgucUGGGCUUCGuCAGGCa -3'
miRNA:   3'- -GCCGCUUA---GGU---GUCCGAGGUcGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 31823 0.66 0.67329
Target:  5'- aGGUcAAUCCGCAGGCacUCCAGaCcuACa -3'
miRNA:   3'- gCCGcUUAGGUGUCCG--AGGUC-GucUG- -5'
18457 5' -56.9 NC_004681.1 + 20480 0.66 0.6626
Target:  5'- aGGCGGgccGUCUuCcGGCUUCGGCGGGa -3'
miRNA:   3'- gCCGCU---UAGGuGuCCGAGGUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 65029 0.67 0.651883
Target:  5'- aGGCGcgucgCCACcucGuGCUCCAgGCGGGCg -3'
miRNA:   3'- gCCGCuua--GGUGu--C-CGAGGU-CGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 7479 0.67 0.647591
Target:  5'- gGGCGGGggcuucuucucggCCGCGGGCUUggCGGgAGGCu -3'
miRNA:   3'- gCCGCUUa------------GGUGUCCGAG--GUCgUCUG- -5'
18457 5' -56.9 NC_004681.1 + 31664 0.67 0.640075
Target:  5'- aCGGCaacGUCCACgucguggucgugaAGGCUCUcGCAGAg -3'
miRNA:   3'- -GCCGcu-UAGGUG-------------UCCGAGGuCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 30764 0.67 0.617519
Target:  5'- aGGCGAgcuugaccgcggcGUCCGCGGgaaucucGCUCCAGUGGuucACg -3'
miRNA:   3'- gCCGCU-------------UAGGUGUC-------CGAGGUCGUC---UG- -5'
18457 5' -56.9 NC_004681.1 + 24649 0.67 0.608936
Target:  5'- aGuGCGAGccacCCACGGGCaCCAGCucguAGGCg -3'
miRNA:   3'- gC-CGCUUa---GGUGUCCGaGGUCG----UCUG- -5'
18457 5' -56.9 NC_004681.1 + 9102 0.67 0.608936
Target:  5'- cCGGCG---CCGCuGGCUCgGGCucuGGCg -3'
miRNA:   3'- -GCCGCuuaGGUGuCCGAGgUCGu--CUG- -5'
18457 5' -56.9 NC_004681.1 + 4515 0.67 0.608936
Target:  5'- aGGCG-GUCCAguuuGGCUagGGCAGACu -3'
miRNA:   3'- gCCGCuUAGGUgu--CCGAggUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 49963 0.68 0.598225
Target:  5'- uGGCGuuUCUGCgGGGUUCUgccaggGGCGGACg -3'
miRNA:   3'- gCCGCuuAGGUG-UCCGAGG------UCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 27439 0.68 0.587541
Target:  5'- uCGGCaugaUCAUGGGCgagcCCAGCGGACa -3'
miRNA:   3'- -GCCGcuuaGGUGUCCGa---GGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 58006 0.68 0.587541
Target:  5'- aGGCGc-UCUACcaacgccucaagAGGCUCaAGCAGACg -3'
miRNA:   3'- gCCGCuuAGGUG------------UCCGAGgUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 36872 0.68 0.576893
Target:  5'- gGGCGGG-CCAgcGGC-CUGGCAGACg -3'
miRNA:   3'- gCCGCUUaGGUguCCGaGGUCGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.