miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18457 5' -56.9 NC_004681.1 + 2922 0.75 0.240725
Target:  5'- gCGGCGGuccCCGCGGGCUCC-GUAGGu -3'
miRNA:   3'- -GCCGCUua-GGUGUCCGAGGuCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 4515 0.67 0.608936
Target:  5'- aGGCG-GUCCAguuuGGCUagGGCAGACu -3'
miRNA:   3'- gCCGCuUAGGUgu--CCGAggUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 7479 0.67 0.647591
Target:  5'- gGGCGGGggcuucuucucggCCGCGGGCUUggCGGgAGGCu -3'
miRNA:   3'- gCCGCUUa------------GGUGUCCGAG--GUCgUCUG- -5'
18457 5' -56.9 NC_004681.1 + 7979 0.72 0.347382
Target:  5'- gCGGCGGcgGUCUcaucgacgggcGCGGGCUCuucguCAGCGGGCg -3'
miRNA:   3'- -GCCGCU--UAGG-----------UGUCCGAG-----GUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 9102 0.67 0.608936
Target:  5'- cCGGCG---CCGCuGGCUCgGGCucuGGCg -3'
miRNA:   3'- -GCCGCuuaGGUGuCCGAGgUCGu--CUG- -5'
18457 5' -56.9 NC_004681.1 + 11660 0.69 0.500924
Target:  5'- uCGGUGcuGAUCCGCGacuggaagccggauGGCUCCaccagccuGGCGGACu -3'
miRNA:   3'- -GCCGC--UUAGGUGU--------------CCGAGG--------UCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 15244 0.71 0.398596
Target:  5'- cCGGCGAuuucacgCUGCGGGCcgUUGGCAGACa -3'
miRNA:   3'- -GCCGCUua-----GGUGUCCGa-GGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 18915 0.7 0.473921
Target:  5'- uGGCcGGUCCcCAGGCUCCcgucGCGGGa -3'
miRNA:   3'- gCCGcUUAGGuGUCCGAGGu---CGUCUg -5'
18457 5' -56.9 NC_004681.1 + 19139 0.69 0.534808
Target:  5'- uCGGCGGAUUCAUAGauggagucGUUCCAGguGuCg -3'
miRNA:   3'- -GCCGCUUAGGUGUC--------CGAGGUCguCuG- -5'
18457 5' -56.9 NC_004681.1 + 20480 0.66 0.6626
Target:  5'- aGGCGGgccGUCUuCcGGCUUCGGCGGGa -3'
miRNA:   3'- gCCGCU---UAGGuGuCCGAGGUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 24649 0.67 0.608936
Target:  5'- aGuGCGAGccacCCACGGGCaCCAGCucguAGGCg -3'
miRNA:   3'- gC-CGCUUa---GGUGUCCGaGGUCG----UCUG- -5'
18457 5' -56.9 NC_004681.1 + 24855 0.66 0.705096
Target:  5'- gGGCGGcggCCGCcaAGGCUCCcucaccAGCAauGGCg -3'
miRNA:   3'- gCCGCUua-GGUG--UCCGAGG------UCGU--CUG- -5'
18457 5' -56.9 NC_004681.1 + 24976 0.69 0.524449
Target:  5'- cCGGCGA---CGgGGGCUCUGGCGGcACa -3'
miRNA:   3'- -GCCGCUuagGUgUCCGAGGUCGUC-UG- -5'
18457 5' -56.9 NC_004681.1 + 25409 0.71 0.40759
Target:  5'- uGGCGugguGUCgAUAGGCUCaGGCGGAg -3'
miRNA:   3'- gCCGCu---UAGgUGUCCGAGgUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 27439 0.68 0.587541
Target:  5'- uCGGCaugaUCAUGGGCgagcCCAGCGGACa -3'
miRNA:   3'- -GCCGcuuaGGUGUCCGa---GGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 28837 0.71 0.38973
Target:  5'- aGGCGcAggCACGGGCUCCAcGgAGACc -3'
miRNA:   3'- gCCGCuUagGUGUCCGAGGU-CgUCUG- -5'
18457 5' -56.9 NC_004681.1 + 30741 0.75 0.246896
Target:  5'- aCGGCaugcucaucGAGUCCGCGGGCUCCAa-GGGCc -3'
miRNA:   3'- -GCCG---------CUUAGGUGUCCGAGGUcgUCUG- -5'
18457 5' -56.9 NC_004681.1 + 30764 0.67 0.617519
Target:  5'- aGGCGAgcuugaccgcggcGUCCGCGGgaaucucGCUCCAGUGGuucACg -3'
miRNA:   3'- gCCGCU-------------UAGGUGUC-------CGAGGUCGUC---UG- -5'
18457 5' -56.9 NC_004681.1 + 30993 0.7 0.439097
Target:  5'- uCGGaGAcGUCCGCguacagggugucgcgGGGCUCCAGCGGGu -3'
miRNA:   3'- -GCCgCU-UAGGUG---------------UCCGAGGUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 31091 0.66 0.715577
Target:  5'- aGGaCGcAGUCCGCAcGCUCaaggAGCAGAUc -3'
miRNA:   3'- gCC-GC-UUAGGUGUcCGAGg---UCGUCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.