miRNA display CGI


Results 21 - 40 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18457 5' -56.9 NC_004681.1 + 31397 0.7 0.454398
Target:  5'- aGGCGAAUgCCuuCGGGCUUCuGCGGcCa -3'
miRNA:   3'- gCCGCUUA-GGu-GUCCGAGGuCGUCuG- -5'
18457 5' -56.9 NC_004681.1 + 31664 0.67 0.640075
Target:  5'- aCGGCaacGUCCACgucguggucgugaAGGCUCUcGCAGAg -3'
miRNA:   3'- -GCCGcu-UAGGUG-------------UCCGAGGuCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 31823 0.66 0.67329
Target:  5'- aGGUcAAUCCGCAGGCacUCCAGaCcuACa -3'
miRNA:   3'- gCCGcUUAGGUGUCCG--AGGUC-GucUG- -5'
18457 5' -56.9 NC_004681.1 + 32832 0.78 0.146252
Target:  5'- aGGCGGGguaccaCACAGGCUgCCAGCGGAa -3'
miRNA:   3'- gCCGCUUag----GUGUCCGA-GGUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 36872 0.68 0.576893
Target:  5'- gGGCGGG-CCAgcGGC-CUGGCAGACg -3'
miRNA:   3'- gCCGCUUaGGUguCCGaGGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 36926 0.66 0.683942
Target:  5'- uGGCGAAcuUCCGagucaUCCAGUAGGCg -3'
miRNA:   3'- gCCGCUU--AGGUguccgAGGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 38235 0.69 0.48384
Target:  5'- gCGGCGGcgCCAUAGGCaCCGuGUcaGGACc -3'
miRNA:   3'- -GCCGCUuaGGUGUCCGaGGU-CG--UCUG- -5'
18457 5' -56.9 NC_004681.1 + 39446 0.69 0.531693
Target:  5'- aGGCcGAUCCACAgcGGCcccucggagccgugUCCAGCGcGGCg -3'
miRNA:   3'- gCCGcUUAGGUGU--CCG--------------AGGUCGU-CUG- -5'
18457 5' -56.9 NC_004681.1 + 40044 0.72 0.37239
Target:  5'- gGGCGAAgccgaucCCGCAGGCcgacgCCAGCAcccagaucGACa -3'
miRNA:   3'- gCCGCUUa------GGUGUCCGa----GGUCGU--------CUG- -5'
18457 5' -56.9 NC_004681.1 + 40666 1.1 0.000777
Target:  5'- gCGGCGAAUCCACAGGCUCCAGCAGACa -3'
miRNA:   3'- -GCCGCUUAGGUGUCCGAGGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 42355 0.75 0.22877
Target:  5'- aGGCGccuUCCGCGGGCgggaCCAGCAG-Cu -3'
miRNA:   3'- gCCGCuu-AGGUGUCCGa---GGUCGUCuG- -5'
18457 5' -56.9 NC_004681.1 + 45663 0.73 0.315943
Target:  5'- gGGCGAuGUCCACcuGCUCCAGgAGcCg -3'
miRNA:   3'- gCCGCU-UAGGUGucCGAGGUCgUCuG- -5'
18457 5' -56.9 NC_004681.1 + 46695 0.66 0.683942
Target:  5'- uCGGCGAGUgggCCGgucUGGGCUUCGuCAGGCa -3'
miRNA:   3'- -GCCGCUUA---GGU---GUCCGAGGUcGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 46964 0.72 0.339317
Target:  5'- aGGCGAuGUCCA-AGGCUCaCAGCGuGGCc -3'
miRNA:   3'- gCCGCU-UAGGUgUCCGAG-GUCGU-CUG- -5'
18457 5' -56.9 NC_004681.1 + 47188 0.68 0.545239
Target:  5'- gCGGCGGcucGUCCuuGGGUUCgCGGCGG-Cg -3'
miRNA:   3'- -GCCGCU---UAGGugUCCGAG-GUCGUCuG- -5'
18457 5' -56.9 NC_004681.1 + 49342 0.71 0.380995
Target:  5'- aCGGCGGcgCCGCGGGCgcugaCCAcUGGGCg -3'
miRNA:   3'- -GCCGCUuaGGUGUCCGa----GGUcGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 49963 0.68 0.598225
Target:  5'- uGGCGuuUCUGCgGGGUUCUgccaggGGCGGACg -3'
miRNA:   3'- gCCGCuuAGGUG-UCCGAGG------UCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 50513 0.7 0.444801
Target:  5'- gCGGUG-GUCCugGGGUUCCAGUAc-- -3'
miRNA:   3'- -GCCGCuUAGGugUCCGAGGUCGUcug -5'
18457 5' -56.9 NC_004681.1 + 58006 0.68 0.587541
Target:  5'- aGGCGc-UCUACcaacgccucaagAGGCUCaAGCAGACg -3'
miRNA:   3'- gCCGCuuAGGUG------------UCCGAGgUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 60040 0.66 0.683942
Target:  5'- uCGGCGGcucCCGCAccuGGCaCCGGCuGACc -3'
miRNA:   3'- -GCCGCUua-GGUGU---CCGaGGUCGuCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.