Results 1 - 20 of 43 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18457 | 5' | -56.9 | NC_004681.1 | + | 40666 | 1.1 | 0.000777 |
Target: 5'- gCGGCGAAUCCACAGGCUCCAGCAGACa -3' miRNA: 3'- -GCCGCUUAGGUGUCCGAGGUCGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 27439 | 0.68 | 0.587541 |
Target: 5'- uCGGCaugaUCAUGGGCgagcCCAGCGGACa -3' miRNA: 3'- -GCCGcuuaGGUGUCCGa---GGUCGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 9102 | 0.67 | 0.608936 |
Target: 5'- cCGGCG---CCGCuGGCUCgGGCucuGGCg -3' miRNA: 3'- -GCCGCuuaGGUGuCCGAGgUCGu--CUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 31664 | 0.67 | 0.640075 |
Target: 5'- aCGGCaacGUCCACgucguggucgugaAGGCUCUcGCAGAg -3' miRNA: 3'- -GCCGcu-UAGGUG-------------UCCGAGGuCGUCUg -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 31823 | 0.66 | 0.67329 |
Target: 5'- aGGUcAAUCCGCAGGCacUCCAGaCcuACa -3' miRNA: 3'- gCCGcUUAGGUGUCCG--AGGUC-GucUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 60040 | 0.66 | 0.683942 |
Target: 5'- uCGGCGGcucCCGCAccuGGCaCCGGCuGACc -3' miRNA: 3'- -GCCGCUua-GGUGU---CCGaGGUCGuCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 36926 | 0.66 | 0.683942 |
Target: 5'- uGGCGAAcuUCCGagucaUCCAGUAGGCg -3' miRNA: 3'- gCCGCUU--AGGUguccgAGGUCGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 24855 | 0.66 | 0.705096 |
Target: 5'- gGGCGGcggCCGCcaAGGCUCCcucaccAGCAauGGCg -3' miRNA: 3'- gCCGCUua-GGUG--UCCGAGG------UCGU--CUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 31091 | 0.66 | 0.715577 |
Target: 5'- aGGaCGcAGUCCGCAcGCUCaaggAGCAGAUc -3' miRNA: 3'- gCC-GC-UUAGGUGUcCGAGg---UCGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 58006 | 0.68 | 0.587541 |
Target: 5'- aGGCGc-UCUACcaacgccucaagAGGCUCaAGCAGACg -3' miRNA: 3'- gCCGCuuAGGUG------------UCCGAGgUCGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 24976 | 0.69 | 0.524449 |
Target: 5'- cCGGCGA---CGgGGGCUCUGGCGGcACa -3' miRNA: 3'- -GCCGCUuagGUgUCCGAGGUCGUC-UG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 30741 | 0.75 | 0.246896 |
Target: 5'- aCGGCaugcucaucGAGUCCGCGGGCUCCAa-GGGCc -3' miRNA: 3'- -GCCG---------CUUAGGUGUCCGAGGUcgUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 46964 | 0.72 | 0.339317 |
Target: 5'- aGGCGAuGUCCA-AGGCUCaCAGCGuGGCc -3' miRNA: 3'- gCCGCU-UAGGUgUCCGAG-GUCGU-CUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 40044 | 0.72 | 0.37239 |
Target: 5'- gGGCGAAgccgaucCCGCAGGCcgacgCCAGCAcccagaucGACa -3' miRNA: 3'- gCCGCUUa------GGUGUCCGa----GGUCGU--------CUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 49342 | 0.71 | 0.380995 |
Target: 5'- aCGGCGGcgCCGCGGGCgcugaCCAcUGGGCg -3' miRNA: 3'- -GCCGCUuaGGUGUCCGa----GGUcGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 28837 | 0.71 | 0.38973 |
Target: 5'- aGGCGcAggCACGGGCUCCAcGgAGACc -3' miRNA: 3'- gCCGCuUagGUGUCCGAGGU-CgUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 18915 | 0.7 | 0.473921 |
Target: 5'- uGGCcGGUCCcCAGGCUCCcgucGCGGGa -3' miRNA: 3'- gCCGcUUAGGuGUCCGAGGu---CGUCUg -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 38235 | 0.69 | 0.48384 |
Target: 5'- gCGGCGGcgCCAUAGGCaCCGuGUcaGGACc -3' miRNA: 3'- -GCCGCUuaGGUGUCCGaGGU-CG--UCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 11660 | 0.69 | 0.500924 |
Target: 5'- uCGGUGcuGAUCCGCGacuggaagccggauGGCUCCaccagccuGGCGGACu -3' miRNA: 3'- -GCCGC--UUAGGUGU--------------CCGAGG--------UCGUCUG- -5' |
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18457 | 5' | -56.9 | NC_004681.1 | + | 75046 | 0.66 | 0.705096 |
Target: 5'- cCGuGCGAguagGUCCAUcagugaGGGCUCC-GUGGGCu -3' miRNA: 3'- -GC-CGCU----UAGGUG------UCCGAGGuCGUCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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