miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18457 5' -56.9 NC_004681.1 + 2922 0.75 0.240725
Target:  5'- gCGGCGGuccCCGCGGGCUCC-GUAGGu -3'
miRNA:   3'- -GCCGCUua-GGUGUCCGAGGuCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 30764 0.67 0.617519
Target:  5'- aGGCGAgcuugaccgcggcGUCCGCGGgaaucucGCUCCAGUGGuucACg -3'
miRNA:   3'- gCCGCU-------------UAGGUGUC-------CGAGGUCGUC---UG- -5'
18457 5' -56.9 NC_004681.1 + 65029 0.67 0.651883
Target:  5'- aGGCGcgucgCCACcucGuGCUCCAgGCGGGCg -3'
miRNA:   3'- gCCGCuua--GGUGu--C-CGAGGU-CGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 75046 0.66 0.705096
Target:  5'- cCGuGCGAguagGUCCAUcagugaGGGCUCC-GUGGGCu -3'
miRNA:   3'- -GC-CGCU----UAGGUG------UCCGAGGuCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 25409 0.71 0.40759
Target:  5'- uGGCGugguGUCgAUAGGCUCaGGCGGAg -3'
miRNA:   3'- gCCGCu---UAGgUGUCCGAGgUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 30993 0.7 0.439097
Target:  5'- uCGGaGAcGUCCGCguacagggugucgcgGGGCUCCAGCGGGu -3'
miRNA:   3'- -GCCgCU-UAGGUG---------------UCCGAGGUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 31397 0.7 0.454398
Target:  5'- aGGCGAAUgCCuuCGGGCUUCuGCGGcCa -3'
miRNA:   3'- gCCGCUUA-GGu-GUCCGAGGuCGUCuG- -5'
18457 5' -56.9 NC_004681.1 + 39446 0.69 0.531693
Target:  5'- aGGCcGAUCCACAgcGGCcccucggagccgugUCCAGCGcGGCg -3'
miRNA:   3'- gCCGcUUAGGUGU--CCG--------------AGGUCGU-CUG- -5'
18457 5' -56.9 NC_004681.1 + 32832 0.78 0.146252
Target:  5'- aGGCGGGguaccaCACAGGCUgCCAGCGGAa -3'
miRNA:   3'- gCCGCUUag----GUGUCCGA-GGUCGUCUg -5'
18457 5' -56.9 NC_004681.1 + 4515 0.67 0.608936
Target:  5'- aGGCG-GUCCAguuuGGCUagGGCAGACu -3'
miRNA:   3'- gCCGCuUAGGUgu--CCGAggUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 36872 0.68 0.576893
Target:  5'- gGGCGGG-CCAgcGGC-CUGGCAGACg -3'
miRNA:   3'- gCCGCUUaGGUguCCGaGGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 47188 0.68 0.545239
Target:  5'- gCGGCGGcucGUCCuuGGGUUCgCGGCGG-Cg -3'
miRNA:   3'- -GCCGCU---UAGGugUCCGAG-GUCGUCuG- -5'
18457 5' -56.9 NC_004681.1 + 45663 0.73 0.315943
Target:  5'- gGGCGAuGUCCACcuGCUCCAGgAGcCg -3'
miRNA:   3'- gCCGCU-UAGGUGucCGAGGUCgUCuG- -5'
18457 5' -56.9 NC_004681.1 + 49963 0.68 0.598225
Target:  5'- uGGCGuuUCUGCgGGGUUCUgccaggGGCGGACg -3'
miRNA:   3'- gCCGCuuAGGUG-UCCGAGG------UCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 7979 0.72 0.347382
Target:  5'- gCGGCGGcgGUCUcaucgacgggcGCGGGCUCuucguCAGCGGGCg -3'
miRNA:   3'- -GCCGCU--UAGG-----------UGUCCGAG-----GUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 19139 0.69 0.534808
Target:  5'- uCGGCGGAUUCAUAGauggagucGUUCCAGguGuCg -3'
miRNA:   3'- -GCCGCUUAGGUGUC--------CGAGGUCguCuG- -5'
18457 5' -56.9 NC_004681.1 + 24649 0.67 0.608936
Target:  5'- aGuGCGAGccacCCACGGGCaCCAGCucguAGGCg -3'
miRNA:   3'- gC-CGCUUa---GGUGUCCGaGGUCG----UCUG- -5'
18457 5' -56.9 NC_004681.1 + 7479 0.67 0.647591
Target:  5'- gGGCGGGggcuucuucucggCCGCGGGCUUggCGGgAGGCu -3'
miRNA:   3'- gCCGCUUa------------GGUGUCCGAG--GUCgUCUG- -5'
18457 5' -56.9 NC_004681.1 + 15244 0.71 0.398596
Target:  5'- cCGGCGAuuucacgCUGCGGGCcgUUGGCAGACa -3'
miRNA:   3'- -GCCGCUua-----GGUGUCCGa-GGUCGUCUG- -5'
18457 5' -56.9 NC_004681.1 + 50513 0.7 0.444801
Target:  5'- gCGGUG-GUCCugGGGUUCCAGUAc-- -3'
miRNA:   3'- -GCCGCuUAGGugUCCGAGGUCGUcug -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.