miRNA display CGI


Results 1 - 20 of 63 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 36961 0.66 0.42317
Target:  5'- cGCGGCGGCCgUCacCGGaa-CGCCc -3'
miRNA:   3'- aCGCUGCCGGgAGaaGCCgcgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 37382 0.66 0.414461
Target:  5'- gUGCGgauggaugcccGCGGCCUUCUuggCGGCGaCgGUCa -3'
miRNA:   3'- -ACGC-----------UGCCGGGAGAa--GCCGC-GgCGGc -5'
18459 3' -63.6 NC_004681.1 + 7263 0.66 0.414461
Target:  5'- cGCGGCcGUCCaCcUCGGCGCCgagugcGCCGc -3'
miRNA:   3'- aCGCUGcCGGGaGaAGCCGCGG------CGGC- -5'
18459 3' -63.6 NC_004681.1 + 3144 0.66 0.414461
Target:  5'- cUGCcACcaGGCCCU---UGGCGCCGCgGg -3'
miRNA:   3'- -ACGcUG--CCGGGAgaaGCCGCGGCGgC- -5'
18459 3' -63.6 NC_004681.1 + 66070 0.66 0.414461
Target:  5'- cGCGGCaGCCUUC-UCGGCcuucguGCCGUa- -3'
miRNA:   3'- aCGCUGcCGGGAGaAGCCG------CGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 26438 0.66 0.405863
Target:  5'- cGgGAa-GCCC-CUUC-GCGCCGCCa -3'
miRNA:   3'- aCgCUgcCGGGaGAAGcCGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 13546 0.66 0.405863
Target:  5'- cGCGA-GGUCCUUcaUCGGC-UCGCCGu -3'
miRNA:   3'- aCGCUgCCGGGAGa-AGCCGcGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 32222 0.66 0.405863
Target:  5'- gGCGugGGCCg-CcgCGGUGaCCGCUu -3'
miRNA:   3'- aCGCugCCGGgaGaaGCCGC-GGCGGc -5'
18459 3' -63.6 NC_004681.1 + 9287 0.66 0.405863
Target:  5'- aUG-GGCGGCaaCUUCUUCGGCaaCGCCu -3'
miRNA:   3'- -ACgCUGCCG--GGAGAAGCCGcgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 3731 0.66 0.405863
Target:  5'- gGCGaggGCGGCCUgCUUCuugucgcgGGCGaCGCCGu -3'
miRNA:   3'- aCGC---UGCCGGGaGAAG--------CCGCgGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 1485 0.66 0.405863
Target:  5'- uUGCGGCaGGCCCgauaggUGGCcaCCGCCu -3'
miRNA:   3'- -ACGCUG-CCGGGagaa--GCCGc-GGCGGc -5'
18459 3' -63.6 NC_004681.1 + 45171 0.66 0.398221
Target:  5'- gGCGAgGGCCUcgaccgcggcggaugCUUCGGCGUCcCCc -3'
miRNA:   3'- aCGCUgCCGGGa--------------GAAGCCGCGGcGGc -5'
18459 3' -63.6 NC_004681.1 + 68555 0.66 0.397378
Target:  5'- -aCGACGaggucaGCCUUCUUCGGCaGCCucaguagaguGCCGu -3'
miRNA:   3'- acGCUGC------CGGGAGAAGCCG-CGG----------CGGC- -5'
18459 3' -63.6 NC_004681.1 + 32010 0.66 0.397378
Target:  5'- cGgGAUgaGGCCCgCgaUGGCgGCCGCCGc -3'
miRNA:   3'- aCgCUG--CCGGGaGaaGCCG-CGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 7336 0.66 0.395695
Target:  5'- cGUgGAUGGCCUggagaagcgCGGUGUCGCCGu -3'
miRNA:   3'- aCG-CUGCCGGGagaa-----GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 75422 0.66 0.389008
Target:  5'- cGCG-CGGCCgUaCUcgCGGCGCaGCCc -3'
miRNA:   3'- aCGCuGCCGGgA-GAa-GCCGCGgCGGc -5'
18459 3' -63.6 NC_004681.1 + 3640 0.66 0.389008
Target:  5'- aGCaGGCcGCCCUCgccuUCGaCGUCGCCGc -3'
miRNA:   3'- aCG-CUGcCGGGAGa---AGCcGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 38985 0.66 0.389008
Target:  5'- aGCaGGCuGGCCUUCUccagUGGCGCCaGCUc -3'
miRNA:   3'- aCG-CUG-CCGGGAGAa---GCCGCGG-CGGc -5'
18459 3' -63.6 NC_004681.1 + 44843 0.66 0.389008
Target:  5'- cGCGAgGGaguCCUCgacgUCgaaGGCGCCGCa- -3'
miRNA:   3'- aCGCUgCCg--GGAGa---AG---CCGCGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 47220 0.66 0.389008
Target:  5'- gGCG-CGGCCCUCggCGuucuCGUCGCUc -3'
miRNA:   3'- aCGCuGCCGGGAGaaGCc---GCGGCGGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.