Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18459 | 3' | -63.6 | NC_004681.1 | + | 7336 | 0.66 | 0.395695 |
Target: 5'- cGUgGAUGGCCUggagaagcgCGGUGUCGCCGu -3' miRNA: 3'- aCG-CUGCCGGGagaa-----GCCGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 32010 | 0.66 | 0.397378 |
Target: 5'- cGgGAUgaGGCCCgCgaUGGCgGCCGCCGc -3' miRNA: 3'- aCgCUG--CCGGGaGaaGCCG-CGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 68555 | 0.66 | 0.397378 |
Target: 5'- -aCGACGaggucaGCCUUCUUCGGCaGCCucaguagaguGCCGu -3' miRNA: 3'- acGCUGC------CGGGAGAAGCCG-CGG----------CGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 45171 | 0.66 | 0.398221 |
Target: 5'- gGCGAgGGCCUcgaccgcggcggaugCUUCGGCGUCcCCc -3' miRNA: 3'- aCGCUgCCGGGa--------------GAAGCCGCGGcGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 32222 | 0.66 | 0.405863 |
Target: 5'- gGCGugGGCCg-CcgCGGUGaCCGCUu -3' miRNA: 3'- aCGCugCCGGgaGaaGCCGC-GGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 13546 | 0.66 | 0.405863 |
Target: 5'- cGCGA-GGUCCUUcaUCGGC-UCGCCGu -3' miRNA: 3'- aCGCUgCCGGGAGa-AGCCGcGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 3731 | 0.66 | 0.405863 |
Target: 5'- gGCGaggGCGGCCUgCUUCuugucgcgGGCGaCGCCGu -3' miRNA: 3'- aCGC---UGCCGGGaGAAG--------CCGCgGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 45432 | 0.66 | 0.380754 |
Target: 5'- cGuCGgaGCGGCCCUUcUCGGUGCggaaguaguccuUGCCGu -3' miRNA: 3'- aC-GC--UGCCGGGAGaAGCCGCG------------GCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 61206 | 0.66 | 0.380754 |
Target: 5'- gGCGACGGCCUgcccacCUUgGGUGaaCCGCa- -3' miRNA: 3'- aCGCUGCCGGGa-----GAAgCCGC--GGCGgc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 37382 | 0.66 | 0.414461 |
Target: 5'- gUGCGgauggaugcccGCGGCCUUCUuggCGGCGaCgGUCa -3' miRNA: 3'- -ACGC-----------UGCCGGGAGAa--GCCGC-GgCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 26438 | 0.66 | 0.405863 |
Target: 5'- cGgGAa-GCCC-CUUC-GCGCCGCCa -3' miRNA: 3'- aCgCUgcCGGGaGAAGcCGCGGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 9287 | 0.66 | 0.405863 |
Target: 5'- aUG-GGCGGCaaCUUCUUCGGCaaCGCCu -3' miRNA: 3'- -ACgCUGCCG--GGAGAAGCCGcgGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 75422 | 0.66 | 0.389008 |
Target: 5'- cGCG-CGGCCgUaCUcgCGGCGCaGCCc -3' miRNA: 3'- aCGCuGCCGGgA-GAa-GCCGCGgCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 3640 | 0.66 | 0.389008 |
Target: 5'- aGCaGGCcGCCCUCgccuUCGaCGUCGCCGc -3' miRNA: 3'- aCG-CUGcCGGGAGa---AGCcGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 18392 | 0.66 | 0.380754 |
Target: 5'- gGCGGCGGCCg-CggCGGCaaaCGCCu -3' miRNA: 3'- aCGCUGCCGGgaGaaGCCGcg-GCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 41787 | 0.66 | 0.372618 |
Target: 5'- -uCGACGGCCUUCgcgccgcagUGGaagaCGCCGCCu -3' miRNA: 3'- acGCUGCCGGGAGaa-------GCC----GCGGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 7263 | 0.66 | 0.414461 |
Target: 5'- cGCGGCcGUCCaCcUCGGCGCCgagugcGCCGc -3' miRNA: 3'- aCGCUGcCGGGaGaAGCCGCGG------CGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 66070 | 0.66 | 0.414461 |
Target: 5'- cGCGGCaGCCUUC-UCGGCcuucguGCCGUa- -3' miRNA: 3'- aCGCUGcCGGGAGaAGCCG------CGGCGgc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 36961 | 0.66 | 0.42317 |
Target: 5'- cGCGGCGGCCgUCacCGGaa-CGCCc -3' miRNA: 3'- aCGCUGCCGGgAGaaGCCgcgGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 12001 | 0.66 | 0.372618 |
Target: 5'- cGCGGCGGUgaacaugaCCUCUucgucguccUCGGUGaCGUCGg -3' miRNA: 3'- aCGCUGCCG--------GGAGA---------AGCCGCgGCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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