miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 41051 1.07 0.000365
Target:  5'- aUGCGACGGCCCUCUUCGGCGCCGCCGc -3'
miRNA:   3'- -ACGCUGCCGGGAGAAGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 39349 0.78 0.060215
Target:  5'- cGCGGCGGCCCU---UGGCGCCcuuGCCGc -3'
miRNA:   3'- aCGCUGCCGGGAgaaGCCGCGG---CGGC- -5'
18459 3' -63.6 NC_004681.1 + 67801 0.76 0.089694
Target:  5'- aGCGccaGCGGCCCUUgucgUCGGUGCCGaCGu -3'
miRNA:   3'- aCGC---UGCCGGGAGa---AGCCGCGGCgGC- -5'
18459 3' -63.6 NC_004681.1 + 66935 0.72 0.154496
Target:  5'- cUGUGGCGGCCCU----GGUGCCGCgCGc -3'
miRNA:   3'- -ACGCUGCCGGGAgaagCCGCGGCG-GC- -5'
18459 3' -63.6 NC_004681.1 + 28121 0.72 0.166663
Target:  5'- aGCGACGGCCCcgCgggcaaCGGCGgCGgCGg -3'
miRNA:   3'- aCGCUGCCGGGa-Gaa----GCCGCgGCgGC- -5'
18459 3' -63.6 NC_004681.1 + 65217 0.71 0.19074
Target:  5'- uUGUGGCGGCCgUaCUUCagGGCGCCuuccaucauugccagGCCGa -3'
miRNA:   3'- -ACGCUGCCGGgA-GAAG--CCGCGG---------------CGGC- -5'
18459 3' -63.6 NC_004681.1 + 56116 0.7 0.229761
Target:  5'- gGCGAUGcggaggucGCCCUCcUUGGCGUCGCg- -3'
miRNA:   3'- aCGCUGC--------CGGGAGaAGCCGCGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 49443 0.7 0.229761
Target:  5'- aGUGGucaGcGCCCg---CGGCGCCGCCGu -3'
miRNA:   3'- aCGCUg--C-CGGGagaaGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 65344 0.7 0.229761
Target:  5'- gGCGAUGGCUUUCacgaggugCGGCagGCCGCUGu -3'
miRNA:   3'- aCGCUGCCGGGAGaa------GCCG--CGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 62953 0.69 0.241094
Target:  5'- aGCGgucGCGGUCCUUcUCGGCGCgcucggugCGCCc -3'
miRNA:   3'- aCGC---UGCCGGGAGaAGCCGCG--------GCGGc -5'
18459 3' -63.6 NC_004681.1 + 31998 0.69 0.252889
Target:  5'- aGCauCGGCUCgCUgaUCGGCGCCGCgGg -3'
miRNA:   3'- aCGcuGCCGGGaGA--AGCCGCGGCGgC- -5'
18459 3' -63.6 NC_004681.1 + 747 0.69 0.252889
Target:  5'- gGUGACGGCCUacc-CGGCccuGCCGCCc -3'
miRNA:   3'- aCGCUGCCGGGagaaGCCG---CGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 2842 0.69 0.252889
Target:  5'- cGuUGACGGCCCacaggugauggUCggaggcgacgagUUCGGCGCCGuCCGc -3'
miRNA:   3'- aC-GCUGCCGGG-----------AG------------AAGCCGCGGC-GGC- -5'
18459 3' -63.6 NC_004681.1 + 6518 0.69 0.258963
Target:  5'- cGCGACaggagugcuGGCCggucgCUUCGGCGCCgggGCCu -3'
miRNA:   3'- aCGCUG---------CCGGga---GAAGCCGCGG---CGGc -5'
18459 3' -63.6 NC_004681.1 + 54963 0.69 0.277898
Target:  5'- uUGCcGCGGUCgUCcUUGGCGUCaGCCGg -3'
miRNA:   3'- -ACGcUGCCGGgAGaAGCCGCGG-CGGC- -5'
18459 3' -63.6 NC_004681.1 + 42808 0.68 0.284451
Target:  5'- cGCGAagcCGaauaCCUUCUcUGGCGCCGCCa -3'
miRNA:   3'- aCGCU---GCc---GGGAGAaGCCGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 60687 0.68 0.287106
Target:  5'- aGCGGCGGCCUcgucgagcaccacguUCgUCGGCcaGCgGCCc -3'
miRNA:   3'- aCGCUGCCGGG---------------AGaAGCCG--CGgCGGc -5'
18459 3' -63.6 NC_004681.1 + 24843 0.68 0.291125
Target:  5'- cGuCGGCGGCgCggg-CGGCgGCCGCCa -3'
miRNA:   3'- aC-GCUGCCGgGagaaGCCG-CGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 50948 0.68 0.30484
Target:  5'- gGCGGCgaGGCgcuucaCCUCUUCGGCGa-GCUGg -3'
miRNA:   3'- aCGCUG--CCG------GGAGAAGCCGCggCGGC- -5'
18459 3' -63.6 NC_004681.1 + 49050 0.68 0.307642
Target:  5'- uUGCGGgagcgcuuggcugccCGGuUCUUCUUgCGGCGCUGCUGg -3'
miRNA:   3'- -ACGCU---------------GCC-GGGAGAA-GCCGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.