miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 18392 0.66 0.380754
Target:  5'- gGCGGCGGCCg-CggCGGCaaaCGCCu -3'
miRNA:   3'- aCGCUGCCGGgaGaaGCCGcg-GCGGc -5'
18459 3' -63.6 NC_004681.1 + 2127 0.66 0.380754
Target:  5'- gUGCGGCcGCCCUCcacgaccaccUGGcCGCgGCCGg -3'
miRNA:   3'- -ACGCUGcCGGGAGaa--------GCC-GCGgCGGC- -5'
18459 3' -63.6 NC_004681.1 + 61206 0.66 0.380754
Target:  5'- gGCGACGGCCUgcccacCUUgGGUGaaCCGCa- -3'
miRNA:   3'- aCGCUGCCGGGa-----GAAgCCGC--GGCGgc -5'
18459 3' -63.6 NC_004681.1 + 45432 0.66 0.380754
Target:  5'- cGuCGgaGCGGCCCUUcUCGGUGCggaaguaguccuUGCCGu -3'
miRNA:   3'- aC-GC--UGCCGGGAGaAGCCGCG------------GCGGC- -5'
18459 3' -63.6 NC_004681.1 + 12001 0.66 0.372618
Target:  5'- cGCGGCGGUgaacaugaCCUCUucgucguccUCGGUGaCGUCGg -3'
miRNA:   3'- aCGCUGCCG--------GGAGA---------AGCCGCgGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 22794 0.66 0.372618
Target:  5'- cUGuCGugGGCCgCUaCUaCGGCaUCGCCGg -3'
miRNA:   3'- -AC-GCugCCGG-GA-GAaGCCGcGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 41787 0.66 0.372618
Target:  5'- -uCGACGGCCUUCgcgccgcagUGGaagaCGCCGCCu -3'
miRNA:   3'- acGCUGCCGGGAGaa-------GCC----GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 34713 0.67 0.364601
Target:  5'- gUGCGGgcuUGGgaauuCCCgcgcgCUUCGGcCGCCGCCc -3'
miRNA:   3'- -ACGCU---GCC-----GGGa----GAAGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 9073 0.67 0.364601
Target:  5'- cGCGucgcugaaguAUGGCCgCgUCgucacCGGCGCCGCUGg -3'
miRNA:   3'- aCGC----------UGCCGG-G-AGaa---GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 38349 0.67 0.356705
Target:  5'- aGCccgGAgGGUCCUgacacggugcCUaUGGCGCCGCCGc -3'
miRNA:   3'- aCG---CUgCCGGGA----------GAaGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 9606 0.67 0.356705
Target:  5'- aGCaGGCcgaGGCgCUCUUCGGCG-CGCaCGg -3'
miRNA:   3'- aCG-CUG---CCGgGAGAAGCCGCgGCG-GC- -5'
18459 3' -63.6 NC_004681.1 + 24957 0.67 0.356705
Target:  5'- gGUGAgGGagCCUUggCGGcCGCCGCCc -3'
miRNA:   3'- aCGCUgCCg-GGAGaaGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 13682 0.67 0.356705
Target:  5'- --aGGCGGUUCgacucCUUCGGgaguaCGCCGCCGa -3'
miRNA:   3'- acgCUGCCGGGa----GAAGCC-----GCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 27924 0.67 0.356705
Target:  5'- aUGagaaGACGGaugcgccaCCg--UUGGCGCCGCCGc -3'
miRNA:   3'- -ACg---CUGCCg-------GGagaAGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 30137 0.67 0.348929
Target:  5'- --aGGCGGCCugugggucgggCUCaggCGGCGCgGCCGc -3'
miRNA:   3'- acgCUGCCGG-----------GAGaa-GCCGCGgCGGC- -5'
18459 3' -63.6 NC_004681.1 + 27777 0.67 0.348158
Target:  5'- aGCGGCGGCgcuaaggugcucaCUUCUggagaugggcgCGGCGgCGCCa -3'
miRNA:   3'- aCGCUGCCG-------------GGAGAa----------GCCGCgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 26811 0.67 0.341274
Target:  5'- cGCGGCGGCCaacgcugacgUCUUCGGCuUCGUUa -3'
miRNA:   3'- aCGCUGCCGGg---------AGAAGCCGcGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 53638 0.67 0.341274
Target:  5'- -aCGACGGCgCC-CUggUCGGUGUCGUCa -3'
miRNA:   3'- acGCUGCCG-GGaGA--AGCCGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 2446 0.67 0.341274
Target:  5'- cGCGACGacaucguccGCCCacUCUUCGGC-CgCGUCGa -3'
miRNA:   3'- aCGCUGC---------CGGG--AGAAGCCGcG-GCGGC- -5'
18459 3' -63.6 NC_004681.1 + 63379 0.67 0.341274
Target:  5'- gGCGauaucGCGGCCCuUCUUCcgucucGUGCCGCUu -3'
miRNA:   3'- aCGC-----UGCCGGG-AGAAGc-----CGCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.