miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 747 0.69 0.252889
Target:  5'- gGUGACGGCCUacc-CGGCccuGCCGCCc -3'
miRNA:   3'- aCGCUGCCGGGagaaGCCG---CGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 1485 0.66 0.405863
Target:  5'- uUGCGGCaGGCCCgauaggUGGCcaCCGCCu -3'
miRNA:   3'- -ACGCUG-CCGGGagaa--GCCGc-GGCGGc -5'
18459 3' -63.6 NC_004681.1 + 2127 0.66 0.380754
Target:  5'- gUGCGGCcGCCCUCcacgaccaccUGGcCGCgGCCGg -3'
miRNA:   3'- -ACGCUGcCGGGAGaa--------GCC-GCGgCGGC- -5'
18459 3' -63.6 NC_004681.1 + 2446 0.67 0.341274
Target:  5'- cGCGACGacaucguccGCCCacUCUUCGGC-CgCGUCGa -3'
miRNA:   3'- aCGCUGC---------CGGG--AGAAGCCGcG-GCGGC- -5'
18459 3' -63.6 NC_004681.1 + 2842 0.69 0.252889
Target:  5'- cGuUGACGGCCCacaggugauggUCggaggcgacgagUUCGGCGCCGuCCGc -3'
miRNA:   3'- aC-GCUGCCGGG-----------AG------------AAGCCGCGGC-GGC- -5'
18459 3' -63.6 NC_004681.1 + 3144 0.66 0.414461
Target:  5'- cUGCcACcaGGCCCU---UGGCGCCGCgGg -3'
miRNA:   3'- -ACGcUG--CCGGGAgaaGCCGCGGCGgC- -5'
18459 3' -63.6 NC_004681.1 + 3640 0.66 0.389008
Target:  5'- aGCaGGCcGCCCUCgccuUCGaCGUCGCCGc -3'
miRNA:   3'- aCG-CUGcCGGGAGa---AGCcGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 3731 0.66 0.405863
Target:  5'- gGCGaggGCGGCCUgCUUCuugucgcgGGCGaCGCCGu -3'
miRNA:   3'- aCGC---UGCCGGGaGAAG--------CCGCgGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 6518 0.69 0.258963
Target:  5'- cGCGACaggagugcuGGCCggucgCUUCGGCGCCgggGCCu -3'
miRNA:   3'- aCGCUG---------CCGGga---GAAGCCGCGG---CGGc -5'
18459 3' -63.6 NC_004681.1 + 7263 0.66 0.414461
Target:  5'- cGCGGCcGUCCaCcUCGGCGCCgagugcGCCGc -3'
miRNA:   3'- aCGCUGcCGGGaGaAGCCGCGG------CGGC- -5'
18459 3' -63.6 NC_004681.1 + 7336 0.66 0.395695
Target:  5'- cGUgGAUGGCCUggagaagcgCGGUGUCGCCGu -3'
miRNA:   3'- aCG-CUGCCGGGagaa-----GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 9073 0.67 0.364601
Target:  5'- cGCGucgcugaaguAUGGCCgCgUCgucacCGGCGCCGCUGg -3'
miRNA:   3'- aCGC----------UGCCGG-G-AGaa---GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 9287 0.66 0.405863
Target:  5'- aUG-GGCGGCaaCUUCUUCGGCaaCGCCu -3'
miRNA:   3'- -ACgCUGCCG--GGAGAAGCCGcgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 9606 0.67 0.356705
Target:  5'- aGCaGGCcgaGGCgCUCUUCGGCG-CGCaCGg -3'
miRNA:   3'- aCG-CUG---CCGgGAGAAGCCGCgGCG-GC- -5'
18459 3' -63.6 NC_004681.1 + 10761 0.67 0.326332
Target:  5'- cGCGACGGCCgCgggCacCGGgGgCGCCa -3'
miRNA:   3'- aCGCUGCCGG-Ga--GaaGCCgCgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 12001 0.66 0.372618
Target:  5'- cGCGGCGGUgaacaugaCCUCUucgucguccUCGGUGaCGUCGg -3'
miRNA:   3'- aCGCUGCCG--------GGAGA---------AGCCGCgGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 13546 0.66 0.405863
Target:  5'- cGCGA-GGUCCUUcaUCGGC-UCGCCGu -3'
miRNA:   3'- aCGCUgCCGGGAGa-AGCCGcGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 13682 0.67 0.356705
Target:  5'- --aGGCGGUUCgacucCUUCGGgaguaCGCCGCCGa -3'
miRNA:   3'- acgCUGCCGGGa----GAAGCC-----GCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 15676 0.67 0.325598
Target:  5'- aGUGACGagaacacggucauGCCCUggUCGGUGCCGgUGa -3'
miRNA:   3'- aCGCUGC-------------CGGGAgaAGCCGCGGCgGC- -5'
18459 3' -63.6 NC_004681.1 + 18392 0.66 0.380754
Target:  5'- gGCGGCGGCCg-CggCGGCaaaCGCCu -3'
miRNA:   3'- aCGCUGCCGGgaGaaGCCGcg-GCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.