miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 22794 0.66 0.372618
Target:  5'- cUGuCGugGGCCgCUaCUaCGGCaUCGCCGg -3'
miRNA:   3'- -AC-GCugCCGG-GA-GAaGCCGcGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 24843 0.68 0.291125
Target:  5'- cGuCGGCGGCgCggg-CGGCgGCCGCCa -3'
miRNA:   3'- aC-GCUGCCGgGagaaGCCG-CGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 24957 0.67 0.356705
Target:  5'- gGUGAgGGagCCUUggCGGcCGCCGCCc -3'
miRNA:   3'- aCGCUgCCg-GGAGaaGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 26438 0.66 0.405863
Target:  5'- cGgGAa-GCCC-CUUC-GCGCCGCCa -3'
miRNA:   3'- aCgCUgcCGGGaGAAGcCGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 26811 0.67 0.341274
Target:  5'- cGCGGCGGCCaacgcugacgUCUUCGGCuUCGUUa -3'
miRNA:   3'- aCGCUGCCGGg---------AGAAGCCGcGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 27777 0.67 0.348158
Target:  5'- aGCGGCGGCgcuaaggugcucaCUUCUggagaugggcgCGGCGgCGCCa -3'
miRNA:   3'- aCGCUGCCG-------------GGAGAa----------GCCGCgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 27924 0.67 0.356705
Target:  5'- aUGagaaGACGGaugcgccaCCg--UUGGCGCCGCCGc -3'
miRNA:   3'- -ACg---CUGCCg-------GGagaAGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 28121 0.72 0.166663
Target:  5'- aGCGACGGCCCcgCgggcaaCGGCGgCGgCGg -3'
miRNA:   3'- aCGCUGCCGGGa-Gaa----GCCGCgGCgGC- -5'
18459 3' -63.6 NC_004681.1 + 30137 0.67 0.348929
Target:  5'- --aGGCGGCCugugggucgggCUCaggCGGCGCgGCCGc -3'
miRNA:   3'- acgCUGCCGG-----------GAGaa-GCCGCGgCGGC- -5'
18459 3' -63.6 NC_004681.1 + 31998 0.69 0.252889
Target:  5'- aGCauCGGCUCgCUgaUCGGCGCCGCgGg -3'
miRNA:   3'- aCGcuGCCGGGaGA--AGCCGCGGCGgC- -5'
18459 3' -63.6 NC_004681.1 + 32010 0.66 0.397378
Target:  5'- cGgGAUgaGGCCCgCgaUGGCgGCCGCCGc -3'
miRNA:   3'- aCgCUG--CCGGGaGaaGCCG-CGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 32222 0.66 0.405863
Target:  5'- gGCGugGGCCg-CcgCGGUGaCCGCUu -3'
miRNA:   3'- aCGCugCCGGgaGaaGCCGC-GGCGGc -5'
18459 3' -63.6 NC_004681.1 + 34713 0.67 0.364601
Target:  5'- gUGCGGgcuUGGgaauuCCCgcgcgCUUCGGcCGCCGCCc -3'
miRNA:   3'- -ACGCU---GCC-----GGGa----GAAGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 36961 0.66 0.42317
Target:  5'- cGCGGCGGCCgUCacCGGaa-CGCCc -3'
miRNA:   3'- aCGCUGCCGGgAGaaGCCgcgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 37382 0.66 0.414461
Target:  5'- gUGCGgauggaugcccGCGGCCUUCUuggCGGCGaCgGUCa -3'
miRNA:   3'- -ACGC-----------UGCCGGGAGAa--GCCGC-GgCGGc -5'
18459 3' -63.6 NC_004681.1 + 38349 0.67 0.356705
Target:  5'- aGCccgGAgGGUCCUgacacggugcCUaUGGCGCCGCCGc -3'
miRNA:   3'- aCG---CUgCCGGGA----------GAaGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 38985 0.66 0.389008
Target:  5'- aGCaGGCuGGCCUUCUccagUGGCGCCaGCUc -3'
miRNA:   3'- aCG-CUG-CCGGGAGAa---GCCGCGG-CGGc -5'
18459 3' -63.6 NC_004681.1 + 39349 0.78 0.060215
Target:  5'- cGCGGCGGCCCU---UGGCGCCcuuGCCGc -3'
miRNA:   3'- aCGCUGCCGGGAgaaGCCGCGG---CGGC- -5'
18459 3' -63.6 NC_004681.1 + 41051 1.07 0.000365
Target:  5'- aUGCGACGGCCCUCUUCGGCGCCGCCGc -3'
miRNA:   3'- -ACGCUGCCGGGAGAAGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 41787 0.66 0.372618
Target:  5'- -uCGACGGCCUUCgcgccgcagUGGaagaCGCCGCCu -3'
miRNA:   3'- acGCUGCCGGGAGaa-------GCC----GCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.