miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 75422 0.66 0.389008
Target:  5'- cGCG-CGGCCgUaCUcgCGGCGCaGCCc -3'
miRNA:   3'- aCGCuGCCGGgA-GAa-GCCGCGgCGGc -5'
18459 3' -63.6 NC_004681.1 + 68555 0.66 0.397378
Target:  5'- -aCGACGaggucaGCCUUCUUCGGCaGCCucaguagaguGCCGu -3'
miRNA:   3'- acGCUGC------CGGGAGAAGCCG-CGG----------CGGC- -5'
18459 3' -63.6 NC_004681.1 + 67801 0.76 0.089694
Target:  5'- aGCGccaGCGGCCCUUgucgUCGGUGCCGaCGu -3'
miRNA:   3'- aCGC---UGCCGGGAGa---AGCCGCGGCgGC- -5'
18459 3' -63.6 NC_004681.1 + 66935 0.72 0.154496
Target:  5'- cUGUGGCGGCCCU----GGUGCCGCgCGc -3'
miRNA:   3'- -ACGCUGCCGGGAgaagCCGCGGCG-GC- -5'
18459 3' -63.6 NC_004681.1 + 66070 0.66 0.414461
Target:  5'- cGCGGCaGCCUUC-UCGGCcuucguGCCGUa- -3'
miRNA:   3'- aCGCUGcCGGGAGaAGCCG------CGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 65344 0.7 0.229761
Target:  5'- gGCGAUGGCUUUCacgaggugCGGCagGCCGCUGu -3'
miRNA:   3'- aCGCUGCCGGGAGaa------GCCG--CGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 65217 0.71 0.19074
Target:  5'- uUGUGGCGGCCgUaCUUCagGGCGCCuuccaucauugccagGCCGa -3'
miRNA:   3'- -ACGCUGCCGGgA-GAAG--CCGCGG---------------CGGC- -5'
18459 3' -63.6 NC_004681.1 + 63379 0.67 0.341274
Target:  5'- gGCGauaucGCGGCCCuUCUUCcgucucGUGCCGCUu -3'
miRNA:   3'- aCGC-----UGCCGGG-AGAAGc-----CGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 62953 0.69 0.241094
Target:  5'- aGCGgucGCGGUCCUUcUCGGCGCgcucggugCGCCc -3'
miRNA:   3'- aCGC---UGCCGGGAGaAGCCGCG--------GCGGc -5'
18459 3' -63.6 NC_004681.1 + 61766 0.67 0.326332
Target:  5'- gGCGGCGG-CCUCcgCGGCGgCGgCu -3'
miRNA:   3'- aCGCUGCCgGGAGaaGCCGCgGCgGc -5'
18459 3' -63.6 NC_004681.1 + 61206 0.66 0.380754
Target:  5'- gGCGACGGCCUgcccacCUUgGGUGaaCCGCa- -3'
miRNA:   3'- aCGCUGCCGGGa-----GAAgCCGC--GGCGgc -5'
18459 3' -63.6 NC_004681.1 + 60687 0.68 0.287106
Target:  5'- aGCGGCGGCCUcgucgagcaccacguUCgUCGGCcaGCgGCCc -3'
miRNA:   3'- aCGCUGCCGGG---------------AGaAGCCG--CGgCGGc -5'
18459 3' -63.6 NC_004681.1 + 56116 0.7 0.229761
Target:  5'- gGCGAUGcggaggucGCCCUCcUUGGCGUCGCg- -3'
miRNA:   3'- aCGCUGC--------CGGGAGaAGCCGCGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 54963 0.69 0.277898
Target:  5'- uUGCcGCGGUCgUCcUUGGCGUCaGCCGg -3'
miRNA:   3'- -ACGcUGCCGGgAGaAGCCGCGG-CGGC- -5'
18459 3' -63.6 NC_004681.1 + 53638 0.67 0.341274
Target:  5'- -aCGACGGCgCC-CUggUCGGUGUCGUCa -3'
miRNA:   3'- acGCUGCCG-GGaGA--AGCCGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 50948 0.68 0.30484
Target:  5'- gGCGGCgaGGCgcuucaCCUCUUCGGCGa-GCUGg -3'
miRNA:   3'- aCGCUG--CCG------GGAGAAGCCGCggCGGC- -5'
18459 3' -63.6 NC_004681.1 + 49443 0.7 0.229761
Target:  5'- aGUGGucaGcGCCCg---CGGCGCCGCCGu -3'
miRNA:   3'- aCGCUg--C-CGGGagaaGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 49050 0.68 0.307642
Target:  5'- uUGCGGgagcgcuuggcugccCGGuUCUUCUUgCGGCGCUGCUGg -3'
miRNA:   3'- -ACGCU---------------GCC-GGGAGAA-GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 47220 0.66 0.389008
Target:  5'- gGCG-CGGCCCUCggCGuucuCGUCGCUc -3'
miRNA:   3'- aCGCuGCCGGGAGaaGCc---GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 45432 0.66 0.380754
Target:  5'- cGuCGgaGCGGCCCUUcUCGGUGCggaaguaguccuUGCCGu -3'
miRNA:   3'- aC-GC--UGCCGGGAGaAGCCGCG------------GCGGC- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.