Results 41 - 60 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18459 | 3' | -63.6 | NC_004681.1 | + | 24957 | 0.67 | 0.356705 |
Target: 5'- gGUGAgGGagCCUUggCGGcCGCCGCCc -3' miRNA: 3'- aCGCUgCCg-GGAGaaGCC-GCGGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 24843 | 0.68 | 0.291125 |
Target: 5'- cGuCGGCGGCgCggg-CGGCgGCCGCCa -3' miRNA: 3'- aC-GCUGCCGgGagaaGCCG-CGGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 22794 | 0.66 | 0.372618 |
Target: 5'- cUGuCGugGGCCgCUaCUaCGGCaUCGCCGg -3' miRNA: 3'- -AC-GCugCCGG-GA-GAaGCCGcGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 18392 | 0.66 | 0.380754 |
Target: 5'- gGCGGCGGCCg-CggCGGCaaaCGCCu -3' miRNA: 3'- aCGCUGCCGGgaGaaGCCGcg-GCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 15676 | 0.67 | 0.325598 |
Target: 5'- aGUGACGagaacacggucauGCCCUggUCGGUGCCGgUGa -3' miRNA: 3'- aCGCUGC-------------CGGGAgaAGCCGCGGCgGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 13682 | 0.67 | 0.356705 |
Target: 5'- --aGGCGGUUCgacucCUUCGGgaguaCGCCGCCGa -3' miRNA: 3'- acgCUGCCGGGa----GAAGCC-----GCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 13546 | 0.66 | 0.405863 |
Target: 5'- cGCGA-GGUCCUUcaUCGGC-UCGCCGu -3' miRNA: 3'- aCGCUgCCGGGAGa-AGCCGcGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 12001 | 0.66 | 0.372618 |
Target: 5'- cGCGGCGGUgaacaugaCCUCUucgucguccUCGGUGaCGUCGg -3' miRNA: 3'- aCGCUGCCG--------GGAGA---------AGCCGCgGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 10761 | 0.67 | 0.326332 |
Target: 5'- cGCGACGGCCgCgggCacCGGgGgCGCCa -3' miRNA: 3'- aCGCUGCCGG-Ga--GaaGCCgCgGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 9606 | 0.67 | 0.356705 |
Target: 5'- aGCaGGCcgaGGCgCUCUUCGGCG-CGCaCGg -3' miRNA: 3'- aCG-CUG---CCGgGAGAAGCCGCgGCG-GC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 9287 | 0.66 | 0.405863 |
Target: 5'- aUG-GGCGGCaaCUUCUUCGGCaaCGCCu -3' miRNA: 3'- -ACgCUGCCG--GGAGAAGCCGcgGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 9073 | 0.67 | 0.364601 |
Target: 5'- cGCGucgcugaaguAUGGCCgCgUCgucacCGGCGCCGCUGg -3' miRNA: 3'- aCGC----------UGCCGG-G-AGaa---GCCGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 7336 | 0.66 | 0.395695 |
Target: 5'- cGUgGAUGGCCUggagaagcgCGGUGUCGCCGu -3' miRNA: 3'- aCG-CUGCCGGGagaa-----GCCGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 7263 | 0.66 | 0.414461 |
Target: 5'- cGCGGCcGUCCaCcUCGGCGCCgagugcGCCGc -3' miRNA: 3'- aCGCUGcCGGGaGaAGCCGCGG------CGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 6518 | 0.69 | 0.258963 |
Target: 5'- cGCGACaggagugcuGGCCggucgCUUCGGCGCCgggGCCu -3' miRNA: 3'- aCGCUG---------CCGGga---GAAGCCGCGG---CGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 3731 | 0.66 | 0.405863 |
Target: 5'- gGCGaggGCGGCCUgCUUCuugucgcgGGCGaCGCCGu -3' miRNA: 3'- aCGC---UGCCGGGaGAAG--------CCGCgGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 3640 | 0.66 | 0.389008 |
Target: 5'- aGCaGGCcGCCCUCgccuUCGaCGUCGCCGc -3' miRNA: 3'- aCG-CUGcCGGGAGa---AGCcGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 3144 | 0.66 | 0.414461 |
Target: 5'- cUGCcACcaGGCCCU---UGGCGCCGCgGg -3' miRNA: 3'- -ACGcUG--CCGGGAgaaGCCGCGGCGgC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 2842 | 0.69 | 0.252889 |
Target: 5'- cGuUGACGGCCCacaggugauggUCggaggcgacgagUUCGGCGCCGuCCGc -3' miRNA: 3'- aC-GCUGCCGGG-----------AG------------AAGCCGCGGC-GGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 2446 | 0.67 | 0.341274 |
Target: 5'- cGCGACGacaucguccGCCCacUCUUCGGC-CgCGUCGa -3' miRNA: 3'- aCGCUGC---------CGGG--AGAAGCCGcG-GCGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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