miRNA display CGI


Results 1 - 20 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 9287 0.66 0.405863
Target:  5'- aUG-GGCGGCaaCUUCUUCGGCaaCGCCu -3'
miRNA:   3'- -ACgCUGCCG--GGAGAAGCCGcgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 13682 0.67 0.356705
Target:  5'- --aGGCGGUUCgacucCUUCGGgaguaCGCCGCCGa -3'
miRNA:   3'- acgCUGCCGGGa----GAAGCC-----GCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 9073 0.67 0.364601
Target:  5'- cGCGucgcugaaguAUGGCCgCgUCgucacCGGCGCCGCUGg -3'
miRNA:   3'- aCGC----------UGCCGG-G-AGaa---GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 34713 0.67 0.364601
Target:  5'- gUGCGGgcuUGGgaauuCCCgcgcgCUUCGGcCGCCGCCc -3'
miRNA:   3'- -ACGCU---GCC-----GGGa----GAAGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 22794 0.66 0.372618
Target:  5'- cUGuCGugGGCCgCUaCUaCGGCaUCGCCGg -3'
miRNA:   3'- -AC-GCugCCGG-GA-GAaGCCGcGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 41787 0.66 0.372618
Target:  5'- -uCGACGGCCUUCgcgccgcagUGGaagaCGCCGCCu -3'
miRNA:   3'- acGCUGCCGGGAGaa-------GCC----GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 18392 0.66 0.380754
Target:  5'- gGCGGCGGCCg-CggCGGCaaaCGCCu -3'
miRNA:   3'- aCGCUGCCGGgaGaaGCCGcg-GCGGc -5'
18459 3' -63.6 NC_004681.1 + 3640 0.66 0.389008
Target:  5'- aGCaGGCcGCCCUCgccuUCGaCGUCGCCGc -3'
miRNA:   3'- aCG-CUGcCGGGAGa---AGCcGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 75422 0.66 0.389008
Target:  5'- cGCG-CGGCCgUaCUcgCGGCGCaGCCc -3'
miRNA:   3'- aCGCuGCCGGgA-GAa-GCCGCGgCGGc -5'
18459 3' -63.6 NC_004681.1 + 30137 0.67 0.348929
Target:  5'- --aGGCGGCCugugggucgggCUCaggCGGCGCgGCCGc -3'
miRNA:   3'- acgCUGCCGG-----------GAGaa-GCCGCGgCGGC- -5'
18459 3' -63.6 NC_004681.1 + 27777 0.67 0.348158
Target:  5'- aGCGGCGGCgcuaaggugcucaCUUCUggagaugggcgCGGCGgCGCCa -3'
miRNA:   3'- aCGCUGCCG-------------GGAGAa----------GCCGCgGCGGc -5'
18459 3' -63.6 NC_004681.1 + 2446 0.67 0.341274
Target:  5'- cGCGACGacaucguccGCCCacUCUUCGGC-CgCGUCGa -3'
miRNA:   3'- aCGCUGC---------CGGG--AGAAGCCGcG-GCGGC- -5'
18459 3' -63.6 NC_004681.1 + 66935 0.72 0.154496
Target:  5'- cUGUGGCGGCCCU----GGUGCCGCgCGc -3'
miRNA:   3'- -ACGCUGCCGGGAgaagCCGCGGCG-GC- -5'
18459 3' -63.6 NC_004681.1 + 28121 0.72 0.166663
Target:  5'- aGCGACGGCCCcgCgggcaaCGGCGgCGgCGg -3'
miRNA:   3'- aCGCUGCCGGGa-Gaa----GCCGCgGCgGC- -5'
18459 3' -63.6 NC_004681.1 + 747 0.69 0.252889
Target:  5'- gGUGACGGCCUacc-CGGCccuGCCGCCc -3'
miRNA:   3'- aCGCUGCCGGGagaaGCCG---CGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 31998 0.69 0.252889
Target:  5'- aGCauCGGCUCgCUgaUCGGCGCCGCgGg -3'
miRNA:   3'- aCGcuGCCGGGaGA--AGCCGCGGCGgC- -5'
18459 3' -63.6 NC_004681.1 + 42808 0.68 0.284451
Target:  5'- cGCGAagcCGaauaCCUUCUcUGGCGCCGCCa -3'
miRNA:   3'- aCGCU---GCc---GGGAGAaGCCGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 24843 0.68 0.291125
Target:  5'- cGuCGGCGGCgCggg-CGGCgGCCGCCa -3'
miRNA:   3'- aC-GCUGCCGgGagaaGCCG-CGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 26811 0.67 0.341274
Target:  5'- cGCGGCGGCCaacgcugacgUCUUCGGCuUCGUUa -3'
miRNA:   3'- aCGCUGCCGGg---------AGAAGCCGcGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 53638 0.67 0.341274
Target:  5'- -aCGACGGCgCC-CUggUCGGUGUCGUCa -3'
miRNA:   3'- acGCUGCCG-GGaGA--AGCCGCGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.