Results 1 - 20 of 63 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18459 | 3' | -63.6 | NC_004681.1 | + | 39349 | 0.78 | 0.060215 |
Target: 5'- cGCGGCGGCCCU---UGGCGCCcuuGCCGc -3' miRNA: 3'- aCGCUGCCGGGAgaaGCCGCGG---CGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 38349 | 0.67 | 0.356705 |
Target: 5'- aGCccgGAgGGUCCUgacacggugcCUaUGGCGCCGCCGc -3' miRNA: 3'- aCG---CUgCCGGGA----------GAaGCCGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 24957 | 0.67 | 0.356705 |
Target: 5'- gGUGAgGGagCCUUggCGGcCGCCGCCc -3' miRNA: 3'- aCGCUgCCg-GGAGaaGCC-GCGGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 66070 | 0.66 | 0.414461 |
Target: 5'- cGCGGCaGCCUUC-UCGGCcuucguGCCGUa- -3' miRNA: 3'- aCGCUGcCGGGAGaAGCCG------CGGCGgc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 56116 | 0.7 | 0.229761 |
Target: 5'- gGCGAUGcggaggucGCCCUCcUUGGCGUCGCg- -3' miRNA: 3'- aCGCUGC--------CGGGAGaAGCCGCGGCGgc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 49443 | 0.7 | 0.229761 |
Target: 5'- aGUGGucaGcGCCCg---CGGCGCCGCCGu -3' miRNA: 3'- aCGCUg--C-CGGGagaaGCCGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 2842 | 0.69 | 0.252889 |
Target: 5'- cGuUGACGGCCCacaggugauggUCggaggcgacgagUUCGGCGCCGuCCGc -3' miRNA: 3'- aC-GCUGCCGGG-----------AG------------AAGCCGCGGC-GGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 6518 | 0.69 | 0.258963 |
Target: 5'- cGCGACaggagugcuGGCCggucgCUUCGGCGCCgggGCCu -3' miRNA: 3'- aCGCUG---------CCGGga---GAAGCCGCGG---CGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 50948 | 0.68 | 0.30484 |
Target: 5'- gGCGGCgaGGCgcuucaCCUCUUCGGCGa-GCUGg -3' miRNA: 3'- aCGCUG--CCG------GGAGAAGCCGCggCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 63379 | 0.67 | 0.341274 |
Target: 5'- gGCGauaucGCGGCCCuUCUUCcgucucGUGCCGCUu -3' miRNA: 3'- aCGC-----UGCCGGG-AGAAGc-----CGCGGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 15676 | 0.67 | 0.325598 |
Target: 5'- aGUGACGagaacacggucauGCCCUggUCGGUGCCGgUGa -3' miRNA: 3'- aCGCUGC-------------CGGGAgaAGCCGCGGCgGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 60687 | 0.68 | 0.287106 |
Target: 5'- aGCGGCGGCCUcgucgagcaccacguUCgUCGGCcaGCgGCCc -3' miRNA: 3'- aCGCUGCCGGG---------------AGaAGCCG--CGgCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 67801 | 0.76 | 0.089694 |
Target: 5'- aGCGccaGCGGCCCUUgucgUCGGUGCCGaCGu -3' miRNA: 3'- aCGC---UGCCGGGAGa---AGCCGCGGCgGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 61766 | 0.67 | 0.326332 |
Target: 5'- gGCGGCGG-CCUCcgCGGCGgCGgCu -3' miRNA: 3'- aCGCUGCCgGGAGaaGCCGCgGCgGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 65217 | 0.71 | 0.19074 |
Target: 5'- uUGUGGCGGCCgUaCUUCagGGCGCCuuccaucauugccagGCCGa -3' miRNA: 3'- -ACGCUGCCGGgA-GAAG--CCGCGG---------------CGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 54963 | 0.69 | 0.277898 |
Target: 5'- uUGCcGCGGUCgUCcUUGGCGUCaGCCGg -3' miRNA: 3'- -ACGcUGCCGGgAGaAGCCGCGG-CGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 10761 | 0.67 | 0.326332 |
Target: 5'- cGCGACGGCCgCgggCacCGGgGgCGCCa -3' miRNA: 3'- aCGCUGCCGG-Ga--GaaGCCgCgGCGGc -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 27924 | 0.67 | 0.356705 |
Target: 5'- aUGagaaGACGGaugcgccaCCg--UUGGCGCCGCCGc -3' miRNA: 3'- -ACg---CUGCCg-------GGagaAGCCGCGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 65344 | 0.7 | 0.229761 |
Target: 5'- gGCGAUGGCUUUCacgaggugCGGCagGCCGCUGu -3' miRNA: 3'- aCGCUGCCGGGAGaa------GCCG--CGGCGGC- -5' |
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18459 | 3' | -63.6 | NC_004681.1 | + | 62953 | 0.69 | 0.241094 |
Target: 5'- aGCGgucGCGGUCCUUcUCGGCGCgcucggugCGCCc -3' miRNA: 3'- aCGC---UGCCGGGAGaAGCCGCG--------GCGGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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