miRNA display CGI


Results 21 - 40 of 63 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18459 3' -63.6 NC_004681.1 + 7336 0.66 0.395695
Target:  5'- cGUgGAUGGCCUggagaagcgCGGUGUCGCCGu -3'
miRNA:   3'- aCG-CUGCCGGGagaa-----GCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 44843 0.66 0.389008
Target:  5'- cGCGAgGGaguCCUCgacgUCgaaGGCGCCGCa- -3'
miRNA:   3'- aCGCUgCCg--GGAGa---AG---CCGCGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 38349 0.67 0.356705
Target:  5'- aGCccgGAgGGUCCUgacacggugcCUaUGGCGCCGCCGc -3'
miRNA:   3'- aCG---CUgCCGGGA----------GAaGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 32222 0.66 0.405863
Target:  5'- gGCGugGGCCg-CcgCGGUGaCCGCUu -3'
miRNA:   3'- aCGCugCCGGgaGaaGCCGC-GGCGGc -5'
18459 3' -63.6 NC_004681.1 + 27924 0.67 0.356705
Target:  5'- aUGagaaGACGGaugcgccaCCg--UUGGCGCCGCCGc -3'
miRNA:   3'- -ACg---CUGCCg-------GGagaAGCCGCGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 38985 0.66 0.389008
Target:  5'- aGCaGGCuGGCCUUCUccagUGGCGCCaGCUc -3'
miRNA:   3'- aCG-CUG-CCGGGAGAa---GCCGCGG-CGGc -5'
18459 3' -63.6 NC_004681.1 + 13546 0.66 0.405863
Target:  5'- cGCGA-GGUCCUUcaUCGGC-UCGCCGu -3'
miRNA:   3'- aCGCUgCCGGGAGa-AGCCGcGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 24957 0.67 0.356705
Target:  5'- gGUGAgGGagCCUUggCGGcCGCCGCCc -3'
miRNA:   3'- aCGCUgCCg-GGAGaaGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 61206 0.66 0.380754
Target:  5'- gGCGACGGCCUgcccacCUUgGGUGaaCCGCa- -3'
miRNA:   3'- aCGCUGCCGGGa-----GAAgCCGC--GGCGgc -5'
18459 3' -63.6 NC_004681.1 + 47220 0.66 0.389008
Target:  5'- gGCG-CGGCCCUCggCGuucuCGUCGCUc -3'
miRNA:   3'- aCGCuGCCGGGAGaaGCc---GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 32010 0.66 0.397378
Target:  5'- cGgGAUgaGGCCCgCgaUGGCgGCCGCCGc -3'
miRNA:   3'- aCgCUG--CCGGGaGaaGCCG-CGGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 3731 0.66 0.405863
Target:  5'- gGCGaggGCGGCCUgCUUCuugucgcgGGCGaCGCCGu -3'
miRNA:   3'- aCGC---UGCCGGGaGAAG--------CCGCgGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 2127 0.66 0.380754
Target:  5'- gUGCGGCcGCCCUCcacgaccaccUGGcCGCgGCCGg -3'
miRNA:   3'- -ACGCUGcCGGGAGaa--------GCC-GCGgCGGC- -5'
18459 3' -63.6 NC_004681.1 + 45432 0.66 0.380754
Target:  5'- cGuCGgaGCGGCCCUUcUCGGUGCggaaguaguccuUGCCGu -3'
miRNA:   3'- aC-GC--UGCCGGGAGaAGCCGCG------------GCGGC- -5'
18459 3' -63.6 NC_004681.1 + 12001 0.66 0.372618
Target:  5'- cGCGGCGGUgaacaugaCCUCUucgucguccUCGGUGaCGUCGg -3'
miRNA:   3'- aCGCUGCCG--------GGAGA---------AGCCGCgGCGGC- -5'
18459 3' -63.6 NC_004681.1 + 9606 0.67 0.356705
Target:  5'- aGCaGGCcgaGGCgCUCUUCGGCG-CGCaCGg -3'
miRNA:   3'- aCG-CUG---CCGgGAGAAGCCGCgGCG-GC- -5'
18459 3' -63.6 NC_004681.1 + 66070 0.66 0.414461
Target:  5'- cGCGGCaGCCUUC-UCGGCcuucguGCCGUa- -3'
miRNA:   3'- aCGCUGcCGGGAGaAGCCG------CGGCGgc -5'
18459 3' -63.6 NC_004681.1 + 63379 0.67 0.341274
Target:  5'- gGCGauaucGCGGCCCuUCUUCcgucucGUGCCGCUu -3'
miRNA:   3'- aCGC-----UGCCGGG-AGAAGc-----CGCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 34713 0.67 0.364601
Target:  5'- gUGCGGgcuUGGgaauuCCCgcgcgCUUCGGcCGCCGCCc -3'
miRNA:   3'- -ACGCU---GCC-----GGGa----GAAGCC-GCGGCGGc -5'
18459 3' -63.6 NC_004681.1 + 24843 0.68 0.291125
Target:  5'- cGuCGGCGGCgCggg-CGGCgGCCGCCa -3'
miRNA:   3'- aC-GCUGCCGgGagaaGCCG-CGGCGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.