miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 22270 0.66 0.459769
Target:  5'- cACUCCGCGuGGCGGCGUG-GGCGc--- -3'
miRNA:   3'- -UGGGGCGU-CCGUCGCGUgCCGCuacu -5'
18460 3' -62 NC_004681.1 + 27614 0.66 0.459769
Target:  5'- cACCCuCGguGGCgcuGGCG-GCGGCGgcGGc -3'
miRNA:   3'- -UGGG-GCguCCG---UCGCgUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 44682 0.66 0.459769
Target:  5'- gUgCgGCGGccGCgAGCGCgGCGGCGAUGAg -3'
miRNA:   3'- uGgGgCGUC--CG-UCGCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 49559 0.66 0.450439
Target:  5'- cCCCCGCGGGCAG-GCccgaGGCa---- -3'
miRNA:   3'- uGGGGCGUCCGUCgCGug--CCGcuacu -5'
18460 3' -62 NC_004681.1 + 59788 0.66 0.450439
Target:  5'- cUCCCaGCAGGgGGCGUgGCGGCGcUGc -3'
miRNA:   3'- uGGGG-CGUCCgUCGCG-UGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 32016 0.66 0.450439
Target:  5'- gGCgCCGCGGGU-GUcgGCACGGcCGGUGu -3'
miRNA:   3'- -UGgGGCGUCCGuCG--CGUGCC-GCUACu -5'
18460 3' -62 NC_004681.1 + 31989 0.66 0.450439
Target:  5'- gGCCgCCGCgAGGUAGUaGUACuGGCGAa-- -3'
miRNA:   3'- -UGG-GGCG-UCCGUCG-CGUG-CCGCUacu -5'
18460 3' -62 NC_004681.1 + 69620 0.66 0.423092
Target:  5'- gGCCgCCGCA-GCAGUGagcaCACGGCG-UGGc -3'
miRNA:   3'- -UGG-GGCGUcCGUCGC----GUGCCGCuACU- -5'
18460 3' -62 NC_004681.1 + 40138 0.66 0.423092
Target:  5'- cGCCCgggacagGCAGGCcGCGaCGCcgcagaucgaGGCGAUGAg -3'
miRNA:   3'- -UGGGg------CGUCCGuCGC-GUG----------CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 2915 0.66 0.422198
Target:  5'- uCCCCGCGGGCuccguagguuuGCGUccgguagagcucuGCGGUgucGAUGAc -3'
miRNA:   3'- uGGGGCGUCCGu----------CGCG-------------UGCCG---CUACU- -5'
18460 3' -62 NC_004681.1 + 17316 0.66 0.421305
Target:  5'- -gCCCGCGGGacgcuacacgcaGGaucaGCGCGGCGAccUGAc -3'
miRNA:   3'- ugGGGCGUCCg-----------UCg---CGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 58752 0.66 0.4142
Target:  5'- gGCCCgcggCGCAGGCGGC-CGUGGCGcagGAc -3'
miRNA:   3'- -UGGG----GCGUCCGUCGcGUGCCGCua-CU- -5'
18460 3' -62 NC_004681.1 + 57437 0.67 0.388227
Target:  5'- uCCCCGCGGuacGCgAGCuuGCGGCGGUa- -3'
miRNA:   3'- uGGGGCGUC---CG-UCGcgUGCCGCUAcu -5'
18460 3' -62 NC_004681.1 + 423 0.67 0.386534
Target:  5'- aGCCCuCGCAgaaauccGGCAGCccgugcuuccgcgGguCGGUGAUGAc -3'
miRNA:   3'- -UGGG-GCGU-------CCGUCG-------------CguGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 24901 0.67 0.379811
Target:  5'- gACCCCgGCaaguGGGCAGCugccacccuucuGCGCGGCGucGAc -3'
miRNA:   3'- -UGGGG-CG----UCCGUCG------------CGUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 49644 0.67 0.379811
Target:  5'- -gCCCGCGGGggaaGGC-CAgGGCGAUGu -3'
miRNA:   3'- ugGGGCGUCCg---UCGcGUgCCGCUACu -5'
18460 3' -62 NC_004681.1 + 3876 0.67 0.379811
Target:  5'- aGCCCaguGCAGaCuucGCGUcaGCGGCGAUGAc -3'
miRNA:   3'- -UGGGg--CGUCcGu--CGCG--UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 2177 0.67 0.371517
Target:  5'- aGCgUCGCGGcGCAGUGCGCGGgaGAcGAc -3'
miRNA:   3'- -UGgGGCGUC-CGUCGCGUGCCg-CUaCU- -5'
18460 3' -62 NC_004681.1 + 70588 0.67 0.363348
Target:  5'- uACUCUGCAGaGCgcucAGCGCAUGGCuGAgGAc -3'
miRNA:   3'- -UGGGGCGUC-CG----UCGCGUGCCG-CUaCU- -5'
18460 3' -62 NC_004681.1 + 19197 0.67 0.363348
Target:  5'- aACCUCGCGccGGguGUcCugGGUGGUGAc -3'
miRNA:   3'- -UGGGGCGU--CCguCGcGugCCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.