miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 41578 1.08 0.000392
Target:  5'- cACCCCGCAGGCAGCGCACGGCGAUGAa -3'
miRNA:   3'- -UGGGGCGUCCGUCGCGUGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 28127 0.77 0.086513
Target:  5'- gGCCCCGCGGGCaacGGCG-GCGGCGGa-- -3'
miRNA:   3'- -UGGGGCGUCCG---UCGCgUGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 2143 0.76 0.088874
Target:  5'- aACCCgGCAGGUuGCGCGgcgUGGUGAUGAu -3'
miRNA:   3'- -UGGGgCGUCCGuCGCGU---GCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 7382 0.75 0.107195
Target:  5'- aGCUcgUCGCAGGCGGCGCAcuCGGCGccGAg -3'
miRNA:   3'- -UGG--GGCGUCCGUCGCGU--GCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 39193 0.75 0.119202
Target:  5'- uGCCCgCGCAGGUGGCcaccagggcuuGCACGGCGcgGu -3'
miRNA:   3'- -UGGG-GCGUCCGUCG-----------CGUGCCGCuaCu -5'
18460 3' -62 NC_004681.1 + 73365 0.74 0.129016
Target:  5'- uGCCuCCGUAGGCaugAGCGCAUGGCGc-GAg -3'
miRNA:   3'- -UGG-GGCGUCCG---UCGCGUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 22957 0.73 0.167343
Target:  5'- gACCuuGguGGUGGCGCugucgaacGCGGgGAUGAg -3'
miRNA:   3'- -UGGggCguCCGUCGCG--------UGCCgCUACU- -5'
18460 3' -62 NC_004681.1 + 39334 0.72 0.171694
Target:  5'- cGCCCuUGCc-GCGGCGCACGGUGAgcUGAc -3'
miRNA:   3'- -UGGG-GCGucCGUCGCGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 14572 0.72 0.175695
Target:  5'- cGCCCUGCucggcggAGGCGGCGCgcGCGGCGu--- -3'
miRNA:   3'- -UGGGGCG-------UCCGUCGCG--UGCCGCuacu -5'
18460 3' -62 NC_004681.1 + 50157 0.72 0.194987
Target:  5'- -aCCCGCAGGCAGuCG-AUGGCGucgGAg -3'
miRNA:   3'- ugGGGCGUCCGUC-GCgUGCCGCua-CU- -5'
18460 3' -62 NC_004681.1 + 14652 0.71 0.199966
Target:  5'- gGCCgUGguGGCGGUG-GCGGCGAUGc -3'
miRNA:   3'- -UGGgGCguCCGUCGCgUGCCGCUACu -5'
18460 3' -62 NC_004681.1 + 25193 0.7 0.232205
Target:  5'- gGCCCCu--GGCGGCGCuggcaACGGCGgcGAc -3'
miRNA:   3'- -UGGGGcguCCGUCGCG-----UGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 52018 0.7 0.237986
Target:  5'- cUCCCGCugccGGguGCGCAagcccaaGGUGGUGAu -3'
miRNA:   3'- uGGGGCGu---CCguCGCGUg------CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 1531 0.7 0.237986
Target:  5'- gACCCCGCccGCGGCGCcaAUGGCcGUGu -3'
miRNA:   3'- -UGGGGCGucCGUCGCG--UGCCGcUACu -5'
18460 3' -62 NC_004681.1 + 17401 0.7 0.243887
Target:  5'- gUCCCGCGGGCAcGCGCGCcagcagGGCGu--- -3'
miRNA:   3'- uGGGGCGUCCGU-CGCGUG------CCGCuacu -5'
18460 3' -62 NC_004681.1 + 14532 0.7 0.249909
Target:  5'- cGCCUCGCGGGCGGCGUAgauuuucgccuCGGCc---- -3'
miRNA:   3'- -UGGGGCGUCCGUCGCGU-----------GCCGcuacu -5'
18460 3' -62 NC_004681.1 + 26133 0.7 0.256053
Target:  5'- gAUCCUGaAGGCGGUGCGCGGCa---- -3'
miRNA:   3'- -UGGGGCgUCCGUCGCGUGCCGcuacu -5'
18460 3' -62 NC_004681.1 + 808 0.7 0.256053
Target:  5'- uCCCgGCAGGCAGaccuCGCAUGGCcccucGAUGu -3'
miRNA:   3'- uGGGgCGUCCGUC----GCGUGCCG-----CUACu -5'
18460 3' -62 NC_004681.1 + 30963 0.7 0.26232
Target:  5'- gGCUCCaGCGGGuCGGCGgGCGGCG-UGc -3'
miRNA:   3'- -UGGGG-CGUCC-GUCGCgUGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 61760 0.7 0.26232
Target:  5'- gGCCuCCGCGgcggcGGCuucuGCGCGCagcuuGGCGAUGGu -3'
miRNA:   3'- -UGG-GGCGU-----CCGu---CGCGUG-----CCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.