miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 70588 0.67 0.363348
Target:  5'- uACUCUGCAGaGCgcucAGCGCAUGGCuGAgGAc -3'
miRNA:   3'- -UGGGGCGUC-CG----UCGCGUGCCG-CUaCU- -5'
18460 3' -62 NC_004681.1 + 33513 0.68 0.355304
Target:  5'- cAUCCCGCAGGCGGUGaa-GGCcAUcGAg -3'
miRNA:   3'- -UGGGGCGUCCGUCGCgugCCGcUA-CU- -5'
18460 3' -62 NC_004681.1 + 57913 0.68 0.350538
Target:  5'- aGCCCCGCuccuucgccaccucGGCGGCGC--GGCGcGUGGu -3'
miRNA:   3'- -UGGGGCGu-------------CCGUCGCGugCCGC-UACU- -5'
18460 3' -62 NC_004681.1 + 32688 0.68 0.347386
Target:  5'- uACCCCGCcGaCGuCGCGCGGCuGGUGGa -3'
miRNA:   3'- -UGGGGCGuCcGUcGCGUGCCG-CUACU- -5'
18460 3' -62 NC_004681.1 + 12032 0.68 0.338823
Target:  5'- --aCCGCAGGUagucgaucagaggGGUGUucuccGCGGCGGUGAa -3'
miRNA:   3'- uggGGCGUCCG-------------UCGCG-----UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 16333 0.68 0.331932
Target:  5'- aGCCgaGCAGGCcaucucCGCuGCGGCGGUGGg -3'
miRNA:   3'- -UGGggCGUCCGuc----GCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 22628 0.68 0.324396
Target:  5'- gACaCCGCGGGCAGCGC-CGcGCGc--- -3'
miRNA:   3'- -UGgGGCGUCCGUCGCGuGC-CGCuacu -5'
18460 3' -62 NC_004681.1 + 4849 0.68 0.322905
Target:  5'- aGCCUCGCAGGCgcuaaagcagaAGCGCGCcaacggauucccGUGGUGAc -3'
miRNA:   3'- -UGGGGCGUCCG-----------UCGCGUGc-----------CGCUACU- -5'
18460 3' -62 NC_004681.1 + 41906 0.69 0.30971
Target:  5'- uGCCCCgGgAGGCGGCGUcuuccacuGCGGCGc-GAa -3'
miRNA:   3'- -UGGGG-CgUCCGUCGCG--------UGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 10542 0.69 0.302558
Target:  5'- aAUCCCGCAGGCGGUGgaggaauccucCACGGaCGuccaGUGGu -3'
miRNA:   3'- -UGGGGCGUCCGUCGC-----------GUGCC-GC----UACU- -5'
18460 3' -62 NC_004681.1 + 39939 0.69 0.302558
Target:  5'- gGCgCgCGCGGGCGcgguGCGCGCGGUGcgGu -3'
miRNA:   3'- -UGgG-GCGUCCGU----CGCGUGCCGCuaCu -5'
18460 3' -62 NC_004681.1 + 30698 0.69 0.296232
Target:  5'- gGCCCUGguGGCGGUGCGaacucccacauguggGGCGAg-- -3'
miRNA:   3'- -UGGGGCguCCGUCGCGUg--------------CCGCUacu -5'
18460 3' -62 NC_004681.1 + 12310 0.69 0.295535
Target:  5'- gGCCaCCGgGGauGCGGCGCGCGGgGAa-- -3'
miRNA:   3'- -UGG-GGCgUC--CGUCGCGUGCCgCUacu -5'
18460 3' -62 NC_004681.1 + 20557 0.69 0.275228
Target:  5'- aACCgCCGCAcaaauGGCGGCGC-UGGCGGa-- -3'
miRNA:   3'- -UGG-GGCGU-----CCGUCGCGuGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 54150 0.69 0.275228
Target:  5'- uGCCgCGCuucuaGGGCucucgGGCGCGCGGCGGa-- -3'
miRNA:   3'- -UGGgGCG-----UCCG-----UCGCGUGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 17935 0.7 0.268712
Target:  5'- uCCCCGCAGGUgAGUGCcgaggGCGGCuccGUGGg -3'
miRNA:   3'- uGGGGCGUCCG-UCGCG-----UGCCGc--UACU- -5'
18460 3' -62 NC_004681.1 + 30144 0.7 0.26232
Target:  5'- aGCUCCG-AGGCcgauGGcCGCgGCGGCGAUGAc -3'
miRNA:   3'- -UGGGGCgUCCG----UC-GCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 61760 0.7 0.26232
Target:  5'- gGCCuCCGCGgcggcGGCuucuGCGCGCagcuuGGCGAUGGu -3'
miRNA:   3'- -UGG-GGCGU-----CCGu---CGCGUG-----CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 30963 0.7 0.26232
Target:  5'- gGCUCCaGCGGGuCGGCGgGCGGCG-UGc -3'
miRNA:   3'- -UGGGG-CGUCC-GUCGCgUGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 26133 0.7 0.256053
Target:  5'- gAUCCUGaAGGCGGUGCGCGGCa---- -3'
miRNA:   3'- -UGGGGCgUCCGUCGCGUGCCGcuacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.