miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 423 0.67 0.386534
Target:  5'- aGCCCuCGCAgaaauccGGCAGCccgugcuuccgcgGguCGGUGAUGAc -3'
miRNA:   3'- -UGGG-GCGU-------CCGUCG-------------CguGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 808 0.7 0.256053
Target:  5'- uCCCgGCAGGCAGaccuCGCAUGGCcccucGAUGu -3'
miRNA:   3'- uGGGgCGUCCGUC----GCGUGCCG-----CUACu -5'
18460 3' -62 NC_004681.1 + 1531 0.7 0.237986
Target:  5'- gACCCCGCccGCGGCGCcaAUGGCcGUGu -3'
miRNA:   3'- -UGGGGCGucCGUCGCG--UGCCGcUACu -5'
18460 3' -62 NC_004681.1 + 2143 0.76 0.088874
Target:  5'- aACCCgGCAGGUuGCGCGgcgUGGUGAUGAu -3'
miRNA:   3'- -UGGGgCGUCCGuCGCGU---GCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 2177 0.67 0.371517
Target:  5'- aGCgUCGCGGcGCAGUGCGCGGgaGAcGAc -3'
miRNA:   3'- -UGgGGCGUC-CGUCGCGUGCCg-CUaCU- -5'
18460 3' -62 NC_004681.1 + 2915 0.66 0.422198
Target:  5'- uCCCCGCGGGCuccguagguuuGCGUccgguagagcucuGCGGUgucGAUGAc -3'
miRNA:   3'- uGGGGCGUCCGu----------CGCG-------------UGCCG---CUACU- -5'
18460 3' -62 NC_004681.1 + 3044 0.67 0.363348
Target:  5'- uCCUCGCuGGUgaacucGGCGCGCguGGCGGUGc -3'
miRNA:   3'- uGGGGCGuCCG------UCGCGUG--CCGCUACu -5'
18460 3' -62 NC_004681.1 + 3876 0.67 0.379811
Target:  5'- aGCCCaguGCAGaCuucGCGUcaGCGGCGAUGAc -3'
miRNA:   3'- -UGGGg--CGUCcGu--CGCG--UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 4849 0.68 0.322905
Target:  5'- aGCCUCGCAGGCgcuaaagcagaAGCGCGCcaacggauucccGUGGUGAc -3'
miRNA:   3'- -UGGGGCGUCCG-----------UCGCGUGc-----------CGCUACU- -5'
18460 3' -62 NC_004681.1 + 7382 0.75 0.107195
Target:  5'- aGCUcgUCGCAGGCGGCGCAcuCGGCGccGAg -3'
miRNA:   3'- -UGG--GGCGUCCGUCGCGU--GCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 10542 0.69 0.302558
Target:  5'- aAUCCCGCAGGCGGUGgaggaauccucCACGGaCGuccaGUGGu -3'
miRNA:   3'- -UGGGGCGUCCGUCGC-----------GUGCC-GC----UACU- -5'
18460 3' -62 NC_004681.1 + 12032 0.68 0.338823
Target:  5'- --aCCGCAGGUagucgaucagaggGGUGUucuccGCGGCGGUGAa -3'
miRNA:   3'- uggGGCGUCCG-------------UCGCG-----UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 12310 0.69 0.295535
Target:  5'- gGCCaCCGgGGauGCGGCGCGCGGgGAa-- -3'
miRNA:   3'- -UGG-GGCgUC--CGUCGCGUGCCgCUacu -5'
18460 3' -62 NC_004681.1 + 14532 0.7 0.249909
Target:  5'- cGCCUCGCGGGCGGCGUAgauuuucgccuCGGCc---- -3'
miRNA:   3'- -UGGGGCGUCCGUCGCGU-----------GCCGcuacu -5'
18460 3' -62 NC_004681.1 + 14572 0.72 0.175695
Target:  5'- cGCCCUGCucggcggAGGCGGCGCgcGCGGCGu--- -3'
miRNA:   3'- -UGGGGCG-------UCCGUCGCG--UGCCGCuacu -5'
18460 3' -62 NC_004681.1 + 14652 0.71 0.199966
Target:  5'- gGCCgUGguGGCGGUG-GCGGCGAUGc -3'
miRNA:   3'- -UGGgGCguCCGUCGCgUGCCGCUACu -5'
18460 3' -62 NC_004681.1 + 16333 0.68 0.331932
Target:  5'- aGCCgaGCAGGCcaucucCGCuGCGGCGGUGGg -3'
miRNA:   3'- -UGGggCGUCCGuc----GCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 17316 0.66 0.421305
Target:  5'- -gCCCGCGGGacgcuacacgcaGGaucaGCGCGGCGAccUGAc -3'
miRNA:   3'- ugGGGCGUCCg-----------UCg---CGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 17401 0.7 0.243887
Target:  5'- gUCCCGCGGGCAcGCGCGCcagcagGGCGu--- -3'
miRNA:   3'- uGGGGCGUCCGU-CGCGUG------CCGCuacu -5'
18460 3' -62 NC_004681.1 + 17935 0.7 0.268712
Target:  5'- uCCCCGCAGGUgAGUGCcgaggGCGGCuccGUGGg -3'
miRNA:   3'- uGGGGCGUCCG-UCGCG-----UGCCGc--UACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.