miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 19197 0.67 0.363348
Target:  5'- aACCUCGCGccGGguGUcCugGGUGGUGAc -3'
miRNA:   3'- -UGGGGCGU--CCguCGcGugCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 20557 0.69 0.275228
Target:  5'- aACCgCCGCAcaaauGGCGGCGC-UGGCGGa-- -3'
miRNA:   3'- -UGG-GGCGU-----CCGUCGCGuGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 22270 0.66 0.459769
Target:  5'- cACUCCGCGuGGCGGCGUG-GGCGc--- -3'
miRNA:   3'- -UGGGGCGU-CCGUCGCGUgCCGCuacu -5'
18460 3' -62 NC_004681.1 + 22628 0.68 0.324396
Target:  5'- gACaCCGCGGGCAGCGC-CGcGCGc--- -3'
miRNA:   3'- -UGgGGCGUCCGUCGCGuGC-CGCuacu -5'
18460 3' -62 NC_004681.1 + 22957 0.73 0.167343
Target:  5'- gACCuuGguGGUGGCGCugucgaacGCGGgGAUGAg -3'
miRNA:   3'- -UGGggCguCCGUCGCG--------UGCCgCUACU- -5'
18460 3' -62 NC_004681.1 + 24901 0.67 0.379811
Target:  5'- gACCCCgGCaaguGGGCAGCugccacccuucuGCGCGGCGucGAc -3'
miRNA:   3'- -UGGGG-CG----UCCGUCG------------CGUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 25193 0.7 0.232205
Target:  5'- gGCCCCu--GGCGGCGCuggcaACGGCGgcGAc -3'
miRNA:   3'- -UGGGGcguCCGUCGCG-----UGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 26133 0.7 0.256053
Target:  5'- gAUCCUGaAGGCGGUGCGCGGCa---- -3'
miRNA:   3'- -UGGGGCgUCCGUCGCGUGCCGcuacu -5'
18460 3' -62 NC_004681.1 + 27614 0.66 0.459769
Target:  5'- cACCCuCGguGGCgcuGGCG-GCGGCGgcGGc -3'
miRNA:   3'- -UGGG-GCguCCG---UCGCgUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 28127 0.77 0.086513
Target:  5'- gGCCCCGCGGGCaacGGCG-GCGGCGGa-- -3'
miRNA:   3'- -UGGGGCGUCCG---UCGCgUGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 30144 0.7 0.26232
Target:  5'- aGCUCCG-AGGCcgauGGcCGCgGCGGCGAUGAc -3'
miRNA:   3'- -UGGGGCgUCCG----UC-GCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 30698 0.69 0.296232
Target:  5'- gGCCCUGguGGCGGUGCGaacucccacauguggGGCGAg-- -3'
miRNA:   3'- -UGGGGCguCCGUCGCGUg--------------CCGCUacu -5'
18460 3' -62 NC_004681.1 + 30963 0.7 0.26232
Target:  5'- gGCUCCaGCGGGuCGGCGgGCGGCG-UGc -3'
miRNA:   3'- -UGGGG-CGUCC-GUCGCgUGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 31989 0.66 0.450439
Target:  5'- gGCCgCCGCgAGGUAGUaGUACuGGCGAa-- -3'
miRNA:   3'- -UGG-GGCG-UCCGUCG-CGUG-CCGCUacu -5'
18460 3' -62 NC_004681.1 + 32016 0.66 0.450439
Target:  5'- gGCgCCGCGGGU-GUcgGCACGGcCGGUGu -3'
miRNA:   3'- -UGgGGCGUCCGuCG--CGUGCC-GCUACu -5'
18460 3' -62 NC_004681.1 + 32688 0.68 0.347386
Target:  5'- uACCCCGCcGaCGuCGCGCGGCuGGUGGa -3'
miRNA:   3'- -UGGGGCGuCcGUcGCGUGCCG-CUACU- -5'
18460 3' -62 NC_004681.1 + 33513 0.68 0.355304
Target:  5'- cAUCCCGCAGGCGGUGaa-GGCcAUcGAg -3'
miRNA:   3'- -UGGGGCGUCCGUCGCgugCCGcUA-CU- -5'
18460 3' -62 NC_004681.1 + 39193 0.75 0.119202
Target:  5'- uGCCCgCGCAGGUGGCcaccagggcuuGCACGGCGcgGu -3'
miRNA:   3'- -UGGG-GCGUCCGUCG-----------CGUGCCGCuaCu -5'
18460 3' -62 NC_004681.1 + 39334 0.72 0.171694
Target:  5'- cGCCCuUGCc-GCGGCGCACGGUGAgcUGAc -3'
miRNA:   3'- -UGGG-GCGucCGUCGCGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 39939 0.69 0.302558
Target:  5'- gGCgCgCGCGGGCGcgguGCGCGCGGUGcgGu -3'
miRNA:   3'- -UGgG-GCGUCCGU----CGCGUGCCGCuaCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.