miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 73365 0.74 0.129016
Target:  5'- uGCCuCCGUAGGCaugAGCGCAUGGCGc-GAg -3'
miRNA:   3'- -UGG-GGCGUCCG---UCGCGUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 70588 0.67 0.363348
Target:  5'- uACUCUGCAGaGCgcucAGCGCAUGGCuGAgGAc -3'
miRNA:   3'- -UGGGGCGUC-CG----UCGCGUGCCG-CUaCU- -5'
18460 3' -62 NC_004681.1 + 69620 0.66 0.423092
Target:  5'- gGCCgCCGCA-GCAGUGagcaCACGGCG-UGGc -3'
miRNA:   3'- -UGG-GGCGUcCGUCGC----GUGCCGCuACU- -5'
18460 3' -62 NC_004681.1 + 61760 0.7 0.26232
Target:  5'- gGCCuCCGCGgcggcGGCuucuGCGCGCagcuuGGCGAUGGu -3'
miRNA:   3'- -UGG-GGCGU-----CCGu---CGCGUG-----CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 59788 0.66 0.450439
Target:  5'- cUCCCaGCAGGgGGCGUgGCGGCGcUGc -3'
miRNA:   3'- uGGGG-CGUCCgUCGCG-UGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 58752 0.66 0.4142
Target:  5'- gGCCCgcggCGCAGGCGGC-CGUGGCGcagGAc -3'
miRNA:   3'- -UGGG----GCGUCCGUCGcGUGCCGCua-CU- -5'
18460 3' -62 NC_004681.1 + 57913 0.68 0.350538
Target:  5'- aGCCCCGCuccuucgccaccucGGCGGCGC--GGCGcGUGGu -3'
miRNA:   3'- -UGGGGCGu-------------CCGUCGCGugCCGC-UACU- -5'
18460 3' -62 NC_004681.1 + 57437 0.67 0.388227
Target:  5'- uCCCCGCGGuacGCgAGCuuGCGGCGGUa- -3'
miRNA:   3'- uGGGGCGUC---CG-UCGcgUGCCGCUAcu -5'
18460 3' -62 NC_004681.1 + 54150 0.69 0.275228
Target:  5'- uGCCgCGCuucuaGGGCucucgGGCGCGCGGCGGa-- -3'
miRNA:   3'- -UGGgGCG-----UCCG-----UCGCGUGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 52018 0.7 0.237986
Target:  5'- cUCCCGCugccGGguGCGCAagcccaaGGUGGUGAu -3'
miRNA:   3'- uGGGGCGu---CCguCGCGUg------CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 50157 0.72 0.194987
Target:  5'- -aCCCGCAGGCAGuCG-AUGGCGucgGAg -3'
miRNA:   3'- ugGGGCGUCCGUC-GCgUGCCGCua-CU- -5'
18460 3' -62 NC_004681.1 + 49644 0.67 0.379811
Target:  5'- -gCCCGCGGGggaaGGC-CAgGGCGAUGu -3'
miRNA:   3'- ugGGGCGUCCg---UCGcGUgCCGCUACu -5'
18460 3' -62 NC_004681.1 + 49559 0.66 0.450439
Target:  5'- cCCCCGCGGGCAG-GCccgaGGCa---- -3'
miRNA:   3'- uGGGGCGUCCGUCgCGug--CCGcuacu -5'
18460 3' -62 NC_004681.1 + 44682 0.66 0.459769
Target:  5'- gUgCgGCGGccGCgAGCGCgGCGGCGAUGAg -3'
miRNA:   3'- uGgGgCGUC--CG-UCGCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 41906 0.69 0.30971
Target:  5'- uGCCCCgGgAGGCGGCGUcuuccacuGCGGCGc-GAa -3'
miRNA:   3'- -UGGGG-CgUCCGUCGCG--------UGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 41578 1.08 0.000392
Target:  5'- cACCCCGCAGGCAGCGCACGGCGAUGAa -3'
miRNA:   3'- -UGGGGCGUCCGUCGCGUGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 40138 0.66 0.423092
Target:  5'- cGCCCgggacagGCAGGCcGCGaCGCcgcagaucgaGGCGAUGAg -3'
miRNA:   3'- -UGGGg------CGUCCGuCGC-GUG----------CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 39939 0.69 0.302558
Target:  5'- gGCgCgCGCGGGCGcgguGCGCGCGGUGcgGu -3'
miRNA:   3'- -UGgG-GCGUCCGU----CGCGUGCCGCuaCu -5'
18460 3' -62 NC_004681.1 + 39334 0.72 0.171694
Target:  5'- cGCCCuUGCc-GCGGCGCACGGUGAgcUGAc -3'
miRNA:   3'- -UGGG-GCGucCGUCGCGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 39193 0.75 0.119202
Target:  5'- uGCCCgCGCAGGUGGCcaccagggcuuGCACGGCGcgGu -3'
miRNA:   3'- -UGGG-GCGUCCGUCG-----------CGUGCCGCuaCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.