Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 3' | -62 | NC_004681.1 | + | 16333 | 0.68 | 0.331932 |
Target: 5'- aGCCgaGCAGGCcaucucCGCuGCGGCGGUGGg -3' miRNA: 3'- -UGGggCGUCCGuc----GCG-UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 14652 | 0.71 | 0.199966 |
Target: 5'- gGCCgUGguGGCGGUG-GCGGCGAUGc -3' miRNA: 3'- -UGGgGCguCCGUCGCgUGCCGCUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 14572 | 0.72 | 0.175695 |
Target: 5'- cGCCCUGCucggcggAGGCGGCGCgcGCGGCGu--- -3' miRNA: 3'- -UGGGGCG-------UCCGUCGCG--UGCCGCuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 14532 | 0.7 | 0.249909 |
Target: 5'- cGCCUCGCGGGCGGCGUAgauuuucgccuCGGCc---- -3' miRNA: 3'- -UGGGGCGUCCGUCGCGU-----------GCCGcuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 12310 | 0.69 | 0.295535 |
Target: 5'- gGCCaCCGgGGauGCGGCGCGCGGgGAa-- -3' miRNA: 3'- -UGG-GGCgUC--CGUCGCGUGCCgCUacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 12032 | 0.68 | 0.338823 |
Target: 5'- --aCCGCAGGUagucgaucagaggGGUGUucuccGCGGCGGUGAa -3' miRNA: 3'- uggGGCGUCCG-------------UCGCG-----UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 10542 | 0.69 | 0.302558 |
Target: 5'- aAUCCCGCAGGCGGUGgaggaauccucCACGGaCGuccaGUGGu -3' miRNA: 3'- -UGGGGCGUCCGUCGC-----------GUGCC-GC----UACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 7382 | 0.75 | 0.107195 |
Target: 5'- aGCUcgUCGCAGGCGGCGCAcuCGGCGccGAg -3' miRNA: 3'- -UGG--GGCGUCCGUCGCGU--GCCGCuaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 4849 | 0.68 | 0.322905 |
Target: 5'- aGCCUCGCAGGCgcuaaagcagaAGCGCGCcaacggauucccGUGGUGAc -3' miRNA: 3'- -UGGGGCGUCCG-----------UCGCGUGc-----------CGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 3876 | 0.67 | 0.379811 |
Target: 5'- aGCCCaguGCAGaCuucGCGUcaGCGGCGAUGAc -3' miRNA: 3'- -UGGGg--CGUCcGu--CGCG--UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 3044 | 0.67 | 0.363348 |
Target: 5'- uCCUCGCuGGUgaacucGGCGCGCguGGCGGUGc -3' miRNA: 3'- uGGGGCGuCCG------UCGCGUG--CCGCUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 2915 | 0.66 | 0.422198 |
Target: 5'- uCCCCGCGGGCuccguagguuuGCGUccgguagagcucuGCGGUgucGAUGAc -3' miRNA: 3'- uGGGGCGUCCGu----------CGCG-------------UGCCG---CUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 2177 | 0.67 | 0.371517 |
Target: 5'- aGCgUCGCGGcGCAGUGCGCGGgaGAcGAc -3' miRNA: 3'- -UGgGGCGUC-CGUCGCGUGCCg-CUaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 2143 | 0.76 | 0.088874 |
Target: 5'- aACCCgGCAGGUuGCGCGgcgUGGUGAUGAu -3' miRNA: 3'- -UGGGgCGUCCGuCGCGU---GCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 1531 | 0.7 | 0.237986 |
Target: 5'- gACCCCGCccGCGGCGCcaAUGGCcGUGu -3' miRNA: 3'- -UGGGGCGucCGUCGCG--UGCCGcUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 808 | 0.7 | 0.256053 |
Target: 5'- uCCCgGCAGGCAGaccuCGCAUGGCcccucGAUGu -3' miRNA: 3'- uGGGgCGUCCGUC----GCGUGCCG-----CUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 423 | 0.67 | 0.386534 |
Target: 5'- aGCCCuCGCAgaaauccGGCAGCccgugcuuccgcgGguCGGUGAUGAc -3' miRNA: 3'- -UGGG-GCGU-------CCGUCG-------------CguGCCGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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