miRNA display CGI


Results 1 - 20 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 32016 0.66 0.450439
Target:  5'- gGCgCCGCGGGU-GUcgGCACGGcCGGUGu -3'
miRNA:   3'- -UGgGGCGUCCGuCG--CGUGCC-GCUACu -5'
18460 3' -62 NC_004681.1 + 16333 0.68 0.331932
Target:  5'- aGCCgaGCAGGCcaucucCGCuGCGGCGGUGGg -3'
miRNA:   3'- -UGGggCGUCCGuc----GCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 32688 0.68 0.347386
Target:  5'- uACCCCGCcGaCGuCGCGCGGCuGGUGGa -3'
miRNA:   3'- -UGGGGCGuCcGUcGCGUGCCG-CUACU- -5'
18460 3' -62 NC_004681.1 + 33513 0.68 0.355304
Target:  5'- cAUCCCGCAGGCGGUGaa-GGCcAUcGAg -3'
miRNA:   3'- -UGGGGCGUCCGUCGCgugCCGcUA-CU- -5'
18460 3' -62 NC_004681.1 + 70588 0.67 0.363348
Target:  5'- uACUCUGCAGaGCgcucAGCGCAUGGCuGAgGAc -3'
miRNA:   3'- -UGGGGCGUC-CG----UCGCGUGCCG-CUaCU- -5'
18460 3' -62 NC_004681.1 + 2177 0.67 0.371517
Target:  5'- aGCgUCGCGGcGCAGUGCGCGGgaGAcGAc -3'
miRNA:   3'- -UGgGGCGUC-CGUCGCGUGCCg-CUaCU- -5'
18460 3' -62 NC_004681.1 + 24901 0.67 0.379811
Target:  5'- gACCCCgGCaaguGGGCAGCugccacccuucuGCGCGGCGucGAc -3'
miRNA:   3'- -UGGGG-CG----UCCGUCG------------CGUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 17316 0.66 0.421305
Target:  5'- -gCCCGCGGGacgcuacacgcaGGaucaGCGCGGCGAccUGAc -3'
miRNA:   3'- ugGGGCGUCCg-----------UCg---CGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 40138 0.66 0.423092
Target:  5'- cGCCCgggacagGCAGGCcGCGaCGCcgcagaucgaGGCGAUGAg -3'
miRNA:   3'- -UGGGg------CGUCCGuCGC-GUG----------CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 22628 0.68 0.324396
Target:  5'- gACaCCGCGGGCAGCGC-CGcGCGc--- -3'
miRNA:   3'- -UGgGGCGUCCGUCGCGuGC-CGCuacu -5'
18460 3' -62 NC_004681.1 + 10542 0.69 0.302558
Target:  5'- aAUCCCGCAGGCGGUGgaggaauccucCACGGaCGuccaGUGGu -3'
miRNA:   3'- -UGGGGCGUCCGUCGC-----------GUGCC-GC----UACU- -5'
18460 3' -62 NC_004681.1 + 30698 0.69 0.296232
Target:  5'- gGCCCUGguGGCGGUGCGaacucccacauguggGGCGAg-- -3'
miRNA:   3'- -UGGGGCguCCGUCGCGUg--------------CCGCUacu -5'
18460 3' -62 NC_004681.1 + 28127 0.77 0.086513
Target:  5'- gGCCCCGCGGGCaacGGCG-GCGGCGGa-- -3'
miRNA:   3'- -UGGGGCGUCCG---UCGCgUGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 2143 0.76 0.088874
Target:  5'- aACCCgGCAGGUuGCGCGgcgUGGUGAUGAu -3'
miRNA:   3'- -UGGGgCGUCCGuCGCGU---GCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 73365 0.74 0.129016
Target:  5'- uGCCuCCGUAGGCaugAGCGCAUGGCGc-GAg -3'
miRNA:   3'- -UGG-GGCGUCCG---UCGCGUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 25193 0.7 0.232205
Target:  5'- gGCCCCu--GGCGGCGCuggcaACGGCGgcGAc -3'
miRNA:   3'- -UGGGGcguCCGUCGCG-----UGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 52018 0.7 0.237986
Target:  5'- cUCCCGCugccGGguGCGCAagcccaaGGUGGUGAu -3'
miRNA:   3'- uGGGGCGu---CCguCGCGUg------CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 26133 0.7 0.256053
Target:  5'- gAUCCUGaAGGCGGUGCGCGGCa---- -3'
miRNA:   3'- -UGGGGCgUCCGUCGCGUGCCGcuacu -5'
18460 3' -62 NC_004681.1 + 17935 0.7 0.268712
Target:  5'- uCCCCGCAGGUgAGUGCcgaggGCGGCuccGUGGg -3'
miRNA:   3'- uGGGGCGUCCG-UCGCG-----UGCCGc--UACU- -5'
18460 3' -62 NC_004681.1 + 20557 0.69 0.275228
Target:  5'- aACCgCCGCAcaaauGGCGGCGC-UGGCGGa-- -3'
miRNA:   3'- -UGG-GGCGU-----CCGUCGCGuGCCGCUacu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.