miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 17935 0.7 0.268712
Target:  5'- uCCCCGCAGGUgAGUGCcgaggGCGGCuccGUGGg -3'
miRNA:   3'- uGGGGCGUCCG-UCGCG-----UGCCGc--UACU- -5'
18460 3' -62 NC_004681.1 + 20557 0.69 0.275228
Target:  5'- aACCgCCGCAcaaauGGCGGCGC-UGGCGGa-- -3'
miRNA:   3'- -UGG-GGCGU-----CCGUCGCGuGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 30698 0.69 0.296232
Target:  5'- gGCCCUGguGGCGGUGCGaacucccacauguggGGCGAg-- -3'
miRNA:   3'- -UGGGGCguCCGUCGCGUg--------------CCGCUacu -5'
18460 3' -62 NC_004681.1 + 10542 0.69 0.302558
Target:  5'- aAUCCCGCAGGCGGUGgaggaauccucCACGGaCGuccaGUGGu -3'
miRNA:   3'- -UGGGGCGUCCGUCGC-----------GUGCC-GC----UACU- -5'
18460 3' -62 NC_004681.1 + 14532 0.7 0.249909
Target:  5'- cGCCUCGCGGGCGGCGUAgauuuucgccuCGGCc---- -3'
miRNA:   3'- -UGGGGCGUCCGUCGCGU-----------GCCGcuacu -5'
18460 3' -62 NC_004681.1 + 808 0.7 0.256053
Target:  5'- uCCCgGCAGGCAGaccuCGCAUGGCcccucGAUGu -3'
miRNA:   3'- uGGGgCGUCCGUC----GCGUGCCG-----CUACu -5'
18460 3' -62 NC_004681.1 + 30963 0.7 0.26232
Target:  5'- gGCUCCaGCGGGuCGGCGgGCGGCG-UGc -3'
miRNA:   3'- -UGGGG-CGUCC-GUCGCgUGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 61760 0.7 0.26232
Target:  5'- gGCCuCCGCGgcggcGGCuucuGCGCGCagcuuGGCGAUGGu -3'
miRNA:   3'- -UGG-GGCGU-----CCGu---CGCGUG-----CCGCUACU- -5'
18460 3' -62 NC_004681.1 + 30144 0.7 0.26232
Target:  5'- aGCUCCG-AGGCcgauGGcCGCgGCGGCGAUGAc -3'
miRNA:   3'- -UGGGGCgUCCG----UC-GCG-UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 54150 0.69 0.275228
Target:  5'- uGCCgCGCuucuaGGGCucucgGGCGCGCGGCGGa-- -3'
miRNA:   3'- -UGGgGCG-----UCCG-----UCGCGUGCCGCUacu -5'
18460 3' -62 NC_004681.1 + 12310 0.69 0.295535
Target:  5'- gGCCaCCGgGGauGCGGCGCGCGGgGAa-- -3'
miRNA:   3'- -UGG-GGCgUC--CGUCGCGUGCCgCUacu -5'
18460 3' -62 NC_004681.1 + 17401 0.7 0.243887
Target:  5'- gUCCCGCGGGCAcGCGCGCcagcagGGCGu--- -3'
miRNA:   3'- uGGGGCGUCCGU-CGCGUG------CCGCuacu -5'
18460 3' -62 NC_004681.1 + 1531 0.7 0.237986
Target:  5'- gACCCCGCccGCGGCGCcaAUGGCcGUGu -3'
miRNA:   3'- -UGGGGCGucCGUCGCG--UGCCGcUACu -5'
18460 3' -62 NC_004681.1 + 14652 0.71 0.199966
Target:  5'- gGCCgUGguGGCGGUG-GCGGCGAUGc -3'
miRNA:   3'- -UGGgGCguCCGUCGCgUGCCGCUACu -5'
18460 3' -62 NC_004681.1 + 50157 0.72 0.194987
Target:  5'- -aCCCGCAGGCAGuCG-AUGGCGucgGAg -3'
miRNA:   3'- ugGGGCGUCCGUC-GCgUGCCGCua-CU- -5'
18460 3' -62 NC_004681.1 + 14572 0.72 0.175695
Target:  5'- cGCCCUGCucggcggAGGCGGCGCgcGCGGCGu--- -3'
miRNA:   3'- -UGGGGCG-------UCCGUCGCG--UGCCGCuacu -5'
18460 3' -62 NC_004681.1 + 39334 0.72 0.171694
Target:  5'- cGCCCuUGCc-GCGGCGCACGGUGAgcUGAc -3'
miRNA:   3'- -UGGG-GCGucCGUCGCGUGCCGCU--ACU- -5'
18460 3' -62 NC_004681.1 + 22957 0.73 0.167343
Target:  5'- gACCuuGguGGUGGCGCugucgaacGCGGgGAUGAg -3'
miRNA:   3'- -UGGggCguCCGUCGCG--------UGCCgCUACU- -5'
18460 3' -62 NC_004681.1 + 39193 0.75 0.119202
Target:  5'- uGCCCgCGCAGGUGGCcaccagggcuuGCACGGCGcgGu -3'
miRNA:   3'- -UGGG-GCGUCCGUCG-----------CGUGCCGCuaCu -5'
18460 3' -62 NC_004681.1 + 44682 0.66 0.459769
Target:  5'- gUgCgGCGGccGCgAGCGCgGCGGCGAUGAg -3'
miRNA:   3'- uGgGgCGUC--CG-UCGCG-UGCCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.