Results 1 - 20 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 3' | -62 | NC_004681.1 | + | 7382 | 0.75 | 0.107195 |
Target: 5'- aGCUcgUCGCAGGCGGCGCAcuCGGCGccGAg -3' miRNA: 3'- -UGG--GGCGUCCGUCGCGU--GCCGCuaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 41906 | 0.69 | 0.30971 |
Target: 5'- uGCCCCgGgAGGCGGCGUcuuccacuGCGGCGc-GAa -3' miRNA: 3'- -UGGGG-CgUCCGUCGCG--------UGCCGCuaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 12032 | 0.68 | 0.338823 |
Target: 5'- --aCCGCAGGUagucgaucagaggGGUGUucuccGCGGCGGUGAa -3' miRNA: 3'- uggGGCGUCCG-------------UCGCG-----UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 44682 | 0.66 | 0.459769 |
Target: 5'- gUgCgGCGGccGCgAGCGCgGCGGCGAUGAg -3' miRNA: 3'- uGgGgCGUC--CG-UCGCG-UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 14572 | 0.72 | 0.175695 |
Target: 5'- cGCCCUGCucggcggAGGCGGCGCgcGCGGCGu--- -3' miRNA: 3'- -UGGGGCG-------UCCGUCGCG--UGCCGCuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 50157 | 0.72 | 0.194987 |
Target: 5'- -aCCCGCAGGCAGuCG-AUGGCGucgGAg -3' miRNA: 3'- ugGGGCGUCCGUC-GCgUGCCGCua-CU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 1531 | 0.7 | 0.237986 |
Target: 5'- gACCCCGCccGCGGCGCcaAUGGCcGUGu -3' miRNA: 3'- -UGGGGCGucCGUCGCG--UGCCGcUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 17401 | 0.7 | 0.243887 |
Target: 5'- gUCCCGCGGGCAcGCGCGCcagcagGGCGu--- -3' miRNA: 3'- uGGGGCGUCCGU-CGCGUG------CCGCuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 30963 | 0.7 | 0.26232 |
Target: 5'- gGCUCCaGCGGGuCGGCGgGCGGCG-UGc -3' miRNA: 3'- -UGGGG-CGUCC-GUCGCgUGCCGCuACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 39939 | 0.69 | 0.302558 |
Target: 5'- gGCgCgCGCGGGCGcgguGCGCGCGGUGcgGu -3' miRNA: 3'- -UGgG-GCGUCCGU----CGCGUGCCGCuaCu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 30144 | 0.7 | 0.26232 |
Target: 5'- aGCUCCG-AGGCcgauGGcCGCgGCGGCGAUGAc -3' miRNA: 3'- -UGGGGCgUCCG----UC-GCG-UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 808 | 0.7 | 0.256053 |
Target: 5'- uCCCgGCAGGCAGaccuCGCAUGGCcccucGAUGu -3' miRNA: 3'- uGGGgCGUCCGUC----GCGUGCCG-----CUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 39193 | 0.75 | 0.119202 |
Target: 5'- uGCCCgCGCAGGUGGCcaccagggcuuGCACGGCGcgGu -3' miRNA: 3'- -UGGG-GCGUCCGUCG-----------CGUGCCGCuaCu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 54150 | 0.69 | 0.275228 |
Target: 5'- uGCCgCGCuucuaGGGCucucgGGCGCGCGGCGGa-- -3' miRNA: 3'- -UGGgGCG-----UCCG-----UCGCGUGCCGCUacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 22957 | 0.73 | 0.167343 |
Target: 5'- gACCuuGguGGUGGCGCugucgaacGCGGgGAUGAg -3' miRNA: 3'- -UGGggCguCCGUCGCG--------UGCCgCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 14532 | 0.7 | 0.249909 |
Target: 5'- cGCCUCGCGGGCGGCGUAgauuuucgccuCGGCc---- -3' miRNA: 3'- -UGGGGCGUCCGUCGCGU-----------GCCGcuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 12310 | 0.69 | 0.295535 |
Target: 5'- gGCCaCCGgGGauGCGGCGCGCGGgGAa-- -3' miRNA: 3'- -UGG-GGCgUC--CGUCGCGUGCCgCUacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 4849 | 0.68 | 0.322905 |
Target: 5'- aGCCUCGCAGGCgcuaaagcagaAGCGCGCcaacggauucccGUGGUGAc -3' miRNA: 3'- -UGGGGCGUCCG-----------UCGCGUGc-----------CGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 39334 | 0.72 | 0.171694 |
Target: 5'- cGCCCuUGCc-GCGGCGCACGGUGAgcUGAc -3' miRNA: 3'- -UGGG-GCGucCGUCGCGUGCCGCU--ACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 14652 | 0.71 | 0.199966 |
Target: 5'- gGCCgUGguGGCGGUG-GCGGCGAUGc -3' miRNA: 3'- -UGGgGCguCCGUCGCgUGCCGCUACu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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