miRNA display CGI


Results 21 - 40 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 3' -62 NC_004681.1 + 2915 0.66 0.422198
Target:  5'- uCCCCGCGGGCuccguagguuuGCGUccgguagagcucuGCGGUgucGAUGAc -3'
miRNA:   3'- uGGGGCGUCCGu----------CGCG-------------UGCCG---CUACU- -5'
18460 3' -62 NC_004681.1 + 4849 0.68 0.322905
Target:  5'- aGCCUCGCAGGCgcuaaagcagaAGCGCGCcaacggauucccGUGGUGAc -3'
miRNA:   3'- -UGGGGCGUCCG-----------UCGCGUGc-----------CGCUACU- -5'
18460 3' -62 NC_004681.1 + 12032 0.68 0.338823
Target:  5'- --aCCGCAGGUagucgaucagaggGGUGUucuccGCGGCGGUGAa -3'
miRNA:   3'- uggGGCGUCCG-------------UCGCG-----UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 57437 0.67 0.388227
Target:  5'- uCCCCGCGGuacGCgAGCuuGCGGCGGUa- -3'
miRNA:   3'- uGGGGCGUC---CG-UCGcgUGCCGCUAcu -5'
18460 3' -62 NC_004681.1 + 59788 0.66 0.450439
Target:  5'- cUCCCaGCAGGgGGCGUgGCGGCGcUGc -3'
miRNA:   3'- uGGGG-CGUCCgUCGCG-UGCCGCuACu -5'
18460 3' -62 NC_004681.1 + 57913 0.68 0.350538
Target:  5'- aGCCCCGCuccuucgccaccucGGCGGCGC--GGCGcGUGGu -3'
miRNA:   3'- -UGGGGCGu-------------CCGUCGCGugCCGC-UACU- -5'
18460 3' -62 NC_004681.1 + 49644 0.67 0.379811
Target:  5'- -gCCCGCGGGggaaGGC-CAgGGCGAUGu -3'
miRNA:   3'- ugGGGCGUCCg---UCGcGUgCCGCUACu -5'
18460 3' -62 NC_004681.1 + 58752 0.66 0.4142
Target:  5'- gGCCCgcggCGCAGGCGGC-CGUGGCGcagGAc -3'
miRNA:   3'- -UGGG----GCGUCCGUCGcGUGCCGCua-CU- -5'
18460 3' -62 NC_004681.1 + 41906 0.69 0.30971
Target:  5'- uGCCCCgGgAGGCGGCGUcuuccacuGCGGCGc-GAa -3'
miRNA:   3'- -UGGGG-CgUCCGUCGCG--------UGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 19197 0.67 0.363348
Target:  5'- aACCUCGCGccGGguGUcCugGGUGGUGAc -3'
miRNA:   3'- -UGGGGCGU--CCguCGcGugCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 423 0.67 0.386534
Target:  5'- aGCCCuCGCAgaaauccGGCAGCccgugcuuccgcgGguCGGUGAUGAc -3'
miRNA:   3'- -UGGG-GCGU-------CCGUCG-------------CguGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 3876 0.67 0.379811
Target:  5'- aGCCCaguGCAGaCuucGCGUcaGCGGCGAUGAc -3'
miRNA:   3'- -UGGGg--CGUCcGu--CGCG--UGCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 3044 0.67 0.363348
Target:  5'- uCCUCGCuGGUgaacucGGCGCGCguGGCGGUGc -3'
miRNA:   3'- uGGGGCGuCCG------UCGCGUG--CCGCUACu -5'
18460 3' -62 NC_004681.1 + 2143 0.76 0.088874
Target:  5'- aACCCgGCAGGUuGCGCGgcgUGGUGAUGAu -3'
miRNA:   3'- -UGGGgCGUCCGuCGCGU---GCCGCUACU- -5'
18460 3' -62 NC_004681.1 + 27614 0.66 0.459769
Target:  5'- cACCCuCGguGGCgcuGGCG-GCGGCGgcGGc -3'
miRNA:   3'- -UGGG-GCguCCG---UCGCgUGCCGCuaCU- -5'
18460 3' -62 NC_004681.1 + 22628 0.68 0.324396
Target:  5'- gACaCCGCGGGCAGCGC-CGcGCGc--- -3'
miRNA:   3'- -UGgGGCGUCCGUCGCGuGC-CGCuacu -5'
18460 3' -62 NC_004681.1 + 26133 0.7 0.256053
Target:  5'- gAUCCUGaAGGCGGUGCGCGGCa---- -3'
miRNA:   3'- -UGGGGCgUCCGUCGCGUGCCGcuacu -5'
18460 3' -62 NC_004681.1 + 33513 0.68 0.355304
Target:  5'- cAUCCCGCAGGCGGUGaa-GGCcAUcGAg -3'
miRNA:   3'- -UGGGGCGUCCGUCGCgugCCGcUA-CU- -5'
18460 3' -62 NC_004681.1 + 32688 0.68 0.347386
Target:  5'- uACCCCGCcGaCGuCGCGCGGCuGGUGGa -3'
miRNA:   3'- -UGGGGCGuCcGUcGCGUGCCG-CUACU- -5'
18460 3' -62 NC_004681.1 + 16333 0.68 0.331932
Target:  5'- aGCCgaGCAGGCcaucucCGCuGCGGCGGUGGg -3'
miRNA:   3'- -UGGggCGUCCGuc----GCG-UGCCGCUACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.