Results 41 - 57 of 57 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18460 | 3' | -62 | NC_004681.1 | + | 73365 | 0.74 | 0.129016 |
Target: 5'- uGCCuCCGUAGGCaugAGCGCAUGGCGc-GAg -3' miRNA: 3'- -UGG-GGCGUCCG---UCGCGUGCCGCuaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 2143 | 0.76 | 0.088874 |
Target: 5'- aACCCgGCAGGUuGCGCGgcgUGGUGAUGAu -3' miRNA: 3'- -UGGGgCGUCCGuCGCGU---GCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 28127 | 0.77 | 0.086513 |
Target: 5'- gGCCCCGCGGGCaacGGCG-GCGGCGGa-- -3' miRNA: 3'- -UGGGGCGUCCG---UCGCgUGCCGCUacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 22628 | 0.68 | 0.324396 |
Target: 5'- gACaCCGCGGGCAGCGC-CGcGCGc--- -3' miRNA: 3'- -UGgGGCGUCCGUCGCGuGC-CGCuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 16333 | 0.68 | 0.331932 |
Target: 5'- aGCCgaGCAGGCcaucucCGCuGCGGCGGUGGg -3' miRNA: 3'- -UGGggCGUCCGuc----GCG-UGCCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 27614 | 0.66 | 0.459769 |
Target: 5'- cACCCuCGguGGCgcuGGCG-GCGGCGgcGGc -3' miRNA: 3'- -UGGG-GCguCCG---UCGCgUGCCGCuaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 22270 | 0.66 | 0.459769 |
Target: 5'- cACUCCGCGuGGCGGCGUG-GGCGc--- -3' miRNA: 3'- -UGGGGCGU-CCGUCGCGUgCCGCuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 32016 | 0.66 | 0.450439 |
Target: 5'- gGCgCCGCGGGU-GUcgGCACGGcCGGUGu -3' miRNA: 3'- -UGgGGCGUCCGuCG--CGUGCC-GCUACu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 49559 | 0.66 | 0.450439 |
Target: 5'- cCCCCGCGGGCAG-GCccgaGGCa---- -3' miRNA: 3'- uGGGGCGUCCGUCgCGug--CCGcuacu -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 40138 | 0.66 | 0.423092 |
Target: 5'- cGCCCgggacagGCAGGCcGCGaCGCcgcagaucgaGGCGAUGAg -3' miRNA: 3'- -UGGGg------CGUCCGuCGC-GUG----------CCGCUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 17316 | 0.66 | 0.421305 |
Target: 5'- -gCCCGCGGGacgcuacacgcaGGaucaGCGCGGCGAccUGAc -3' miRNA: 3'- ugGGGCGUCCg-----------UCg---CGUGCCGCU--ACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 24901 | 0.67 | 0.379811 |
Target: 5'- gACCCCgGCaaguGGGCAGCugccacccuucuGCGCGGCGucGAc -3' miRNA: 3'- -UGGGG-CG----UCCGUCG------------CGUGCCGCuaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 2177 | 0.67 | 0.371517 |
Target: 5'- aGCgUCGCGGcGCAGUGCGCGGgaGAcGAc -3' miRNA: 3'- -UGgGGCGUC-CGUCGCGUGCCg-CUaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 70588 | 0.67 | 0.363348 |
Target: 5'- uACUCUGCAGaGCgcucAGCGCAUGGCuGAgGAc -3' miRNA: 3'- -UGGGGCGUC-CG----UCGCGUGCCG-CUaCU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 33513 | 0.68 | 0.355304 |
Target: 5'- cAUCCCGCAGGCGGUGaa-GGCcAUcGAg -3' miRNA: 3'- -UGGGGCGUCCGUCGCgugCCGcUA-CU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 32688 | 0.68 | 0.347386 |
Target: 5'- uACCCCGCcGaCGuCGCGCGGCuGGUGGa -3' miRNA: 3'- -UGGGGCGuCcGUcGCGUGCCG-CUACU- -5' |
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18460 | 3' | -62 | NC_004681.1 | + | 41578 | 1.08 | 0.000392 |
Target: 5'- cACCCCGCAGGCAGCGCACGGCGAUGAa -3' miRNA: 3'- -UGGGGCGUCCGUCGCGUGCCGCUACU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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