miRNA display CGI


Results 1 - 20 of 77 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18460 5' -57.2 NC_004681.1 + 63150 0.66 0.711041
Target:  5'- gGUCuGCGACGAcuCGCCC-CUUCCc- -3'
miRNA:   3'- gCGG-UGCUGCUuuGCGGGuGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 34782 0.66 0.711041
Target:  5'- gCGCCGaaGCGAGAC-CCCGaacaaCUCCAGg -3'
miRNA:   3'- -GCGGUgcUGCUUUGcGGGUg----GAGGUU- -5'
18460 5' -57.2 NC_004681.1 + 68560 0.66 0.711041
Target:  5'- uCGUCACGACGAGGucaGCCUucuucggcaGCCUCa-- -3'
miRNA:   3'- -GCGGUGCUGCUUUg--CGGG---------UGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 2873 0.66 0.711041
Target:  5'- uCGaCCGUGACGAAGC-CCC-CCUCCc- -3'
miRNA:   3'- -GC-GGUGCUGCUUUGcGGGuGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 44998 0.66 0.711041
Target:  5'- gGCCuCGugGGcguCGCCCGCUUCg-- -3'
miRNA:   3'- gCGGuGCugCUuu-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 69114 0.66 0.700597
Target:  5'- gCGCCGCcuCGcccGCGCCCugGCCUCCc- -3'
miRNA:   3'- -GCGGUGcuGCuu-UGCGGG--UGGAGGuu -5'
18460 5' -57.2 NC_004681.1 + 43873 0.66 0.700597
Target:  5'- gGUCACGACucGcCGCCCugCUCgGu -3'
miRNA:   3'- gCGGUGCUGcuUuGCGGGugGAGgUu -5'
18460 5' -57.2 NC_004681.1 + 48500 0.66 0.700597
Target:  5'- uCGCCGCGgagaacccggaGCGGGugGCgCACUgCCAAu -3'
miRNA:   3'- -GCGGUGC-----------UGCUUugCGgGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 34345 0.66 0.6985
Target:  5'- aCGCCGCGGCGGcgugaggguuguGCGCgcugcggaaauCCACCcCCAGa -3'
miRNA:   3'- -GCGGUGCUGCUu-----------UGCG-----------GGUGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 29682 0.66 0.69009
Target:  5'- gGCCAgcACGuuGcCGCCCACCUCg-- -3'
miRNA:   3'- gCGGUgcUGCuuU-GCGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 17667 0.66 0.686927
Target:  5'- gGCCGCGGCGucACuGCCCcaguugaaggggguGCCgCCAGg -3'
miRNA:   3'- gCGGUGCUGCuuUG-CGGG--------------UGGaGGUU- -5'
18460 5' -57.2 NC_004681.1 + 40561 0.66 0.685872
Target:  5'- gGCCGCGGCGuucaaugucauCGgCCGCCUCa-- -3'
miRNA:   3'- gCGGUGCUGCuuu--------GCgGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 20263 0.66 0.679531
Target:  5'- uCGCCACGAacaacAACGuCCCGCCgcUCCu- -3'
miRNA:   3'- -GCGGUGCUgcu--UUGC-GGGUGG--AGGuu -5'
18460 5' -57.2 NC_004681.1 + 40981 0.66 0.678472
Target:  5'- aG-CGCGGCGAAGCagguuaaGCCCACCUUg-- -3'
miRNA:   3'- gCgGUGCUGCUUUG-------CGGGUGGAGguu -5'
18460 5' -57.2 NC_004681.1 + 5777 0.66 0.668929
Target:  5'- aCGCCaccGCGGCGAuguggaagAACGCUgGCCgccCCAAc -3'
miRNA:   3'- -GCGG---UGCUGCU--------UUGCGGgUGGa--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 47110 0.66 0.668929
Target:  5'- cCGCCgcugaGCGACGAGaACGCCgaggGCCgcgCCGAa -3'
miRNA:   3'- -GCGG-----UGCUGCUU-UGCGGg---UGGa--GGUU- -5'
18460 5' -57.2 NC_004681.1 + 25290 0.66 0.668929
Target:  5'- uCGCC-CGAUGAGACGaCuCCGCCUgagCCu- -3'
miRNA:   3'- -GCGGuGCUGCUUUGC-G-GGUGGA---GGuu -5'
18460 5' -57.2 NC_004681.1 + 45674 0.66 0.658295
Target:  5'- gGCCACcuuGCGGgcGAUGUCCACCugcUCCAGg -3'
miRNA:   3'- gCGGUGc--UGCU--UUGCGGGUGG---AGGUU- -5'
18460 5' -57.2 NC_004681.1 + 47388 0.67 0.647639
Target:  5'- gCGCCACGGCGAcGCGgUCCugCgacgucgUCAAg -3'
miRNA:   3'- -GCGGUGCUGCUuUGC-GGGugGa------GGUU- -5'
18460 5' -57.2 NC_004681.1 + 57068 0.67 0.647639
Target:  5'- aGUC-CGugGAcgaaGGCGUCUGCCUCCGc -3'
miRNA:   3'- gCGGuGCugCU----UUGCGGGUGGAGGUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.